Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001709-TA|BGIBMGA001709-PA|undefined
(622 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 32 0.27
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa... 31 0.36
SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces pomb... 29 1.9
SPBC557.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 29 2.5
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi... 27 5.9
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 5.9
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c... 27 7.7
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 27 7.7
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 31.9 bits (69), Expect = 0.27
Identities = 32/169 (18%), Positives = 69/169 (40%), Gaps = 10/169 (5%)
Query: 190 NDECESTTQPAEELDNDADP---SRTEQNDTSSLASPAELXXXXXXXXXXXXXXXXXXXX 246
+ E ES+++ ++ + +D S +E +D+SS +S +E
Sbjct: 134 DSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESES 193
Query: 247 XXH---SRPCNPTIEVTSSQQVTDCDTSLNLSERDSELCLTTARCCRAARQPRSAGDSCE 303
S + E SS + +D +S + SE +S + + + S+ + +
Sbjct: 194 SSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSD 253
Query: 304 RQRGSPASRGRSETRRAKLASRVRLRTADSRDPSTDEAWSLEAERLAQD 352
S S S ++ + +S ++DS D S+ ++ E+E ++D
Sbjct: 254 SSSSSSDSESESSSKDSDSSSN----SSDSEDDSSSDSSDSESESSSED 298
Score = 31.1 bits (67), Expect = 0.48
Identities = 34/194 (17%), Positives = 74/194 (38%), Gaps = 5/194 (2%)
Query: 190 NDECESTTQPAEELDNDADP---SRTEQNDTSSLASPAELXXXXXXXXXXXXXXXXXXXX 246
+ E ES+++ + + +D S +E +D+SS +S +E
Sbjct: 116 SSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESES 175
Query: 247 XXHSRPCNPTIEVTSSQQVT-DCDTSLNLSERDSELCLTTARCCRAARQPRSAGDSCERQ 305
+ + + S+ + D D+S + S+ +SE + ++ S S +
Sbjct: 176 SSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDND 235
Query: 306 RGSPASRGRSETRRAKLASRVRLRTADSRDPSTDEAWSLEAERLAQDVCAQADLREALVA 365
S +S SE+ S ++S S D S + D + + E+ +
Sbjct: 236 SSSSSSDSESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDSES-ES 294
Query: 366 AGNDGEALSASVEA 379
+ D ++ S+S ++
Sbjct: 295 SSEDSDSTSSSSDS 308
>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 31.5 bits (68), Expect = 0.36
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 35 GGELSRSTAYYYGDLEKLKRQKPLEDVPEQRQETSEICEIVPQRNVM 81
G + SRS A+YYG+ +K K +K + D P+++ + + I PQ M
Sbjct: 55 GSQASRSRAFYYGE-DKRKIEKKMLDTPDRK--SYSLSPISPQSQDM 98
>SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 455
Score = 29.1 bits (62), Expect = 1.9
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 189 QNDECESTTQPAEELDNDADPSRTE-QNDTSSLASPAEL 226
Q D+ E+ ++L +ADP+ E ND S + +P+E+
Sbjct: 7 QTDDVETLMASLDQLGMEADPTSKEFNNDDSKIGAPSEV 45
>SPBC557.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 28.7 bits (61), Expect = 2.5
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 5/87 (5%)
Query: 327 RLRTADSRDPSTDEAWSLEAERLAQDVCAQADLREALVAAGNDGEALSASVEALKAHCRK 386
+LR + + WSLE +RL Q ++ L+E L +D + L L
Sbjct: 77 KLRKMKAMQERQERNWSLERQRLVQHFESKTKLQEILKPLSSDPK-LKQPSNCLNDQTNN 135
Query: 387 LEA----DNAVTQAALEQATDVVHRLY 409
A DN Q EQ + +R+Y
Sbjct: 136 DSAQTLDDNRALQEFDEQVVQLTNRMY 162
>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 893
Score = 27.5 bits (58), Expect = 5.9
Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 1/102 (0%)
Query: 304 RQRGSPASRGRSETRRAKLASRVRLRTADSRDPSTDEAWSLEAERLAQDVCAQADLREAL 363
+Q+ +R +E ++ A R A S + A S+EAERLA + E +
Sbjct: 783 QQKAEQEAREAAEKAASEAAERSSSEAAASSSSESVAAASVEAERLAMEADEFNGASETV 842
Query: 364 VAAGNDGEALSASVEALKAHCRKLE-ADNAVTQAALEQATDV 404
A + E + AL E ++ A EQ +V
Sbjct: 843 DGASVEAERSAMEAAALNNAAESTEVVGSSPESVASEQEENV 884
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.5 bits (58), Expect = 5.9
Identities = 25/123 (20%), Positives = 45/123 (36%), Gaps = 6/123 (4%)
Query: 182 TAAPIPGQNDECESTTQPAEELDNDADPSRTEQNDTSSLASPAELXXXXXXXXXXXXXXX 241
T +P+ + C + T + + ++ S + + T S +SP
Sbjct: 66 TGSPVEITSTSCTTDTSASTPIITESTSSTSSASTTGSSSSPLP---STSTSCTTSTSIP 122
Query: 242 XXXXXXXHSRPCNPTI--EVTSSQQVTDCDTSLNLSERDSELCLTTARCCRAARQ-PRSA 298
S P PT+ TSS + TS + ++ +S TT+ C + P +
Sbjct: 123 PTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPTTSTSCTTSTSIPPTG 182
Query: 299 GDS 301
G S
Sbjct: 183 GSS 185
>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 625
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 177 SLRPVTAAPIPGQNDECESTTQPAEELDNDADPSRTEQNDTSSL 220
S+ P I GQ+D+ T EE D+D D + ++S+
Sbjct: 219 SVLPNAVKNIDGQDDDSSEQTAAFEEYDDDDDDDVDDNEQSNSM 262
>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1316
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/57 (22%), Positives = 25/57 (43%)
Query: 160 PNVGDEEISRESSWRYSSLRPVTAAPIPGQNDECESTTQPAEELDNDADPSRTEQND 216
P+V EE+ S + + + P+TAA + N + N P+ + +N+
Sbjct: 429 PSVSPEEVHDISQFNHRNDPPITAASVDSSNSFSVHRSSTNHSSTNSGSPNLSRRNN 485
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.127 0.367
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,160,035
Number of Sequences: 5004
Number of extensions: 71054
Number of successful extensions: 185
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 182
Number of HSP's gapped (non-prelim): 9
length of query: 622
length of database: 2,362,478
effective HSP length: 77
effective length of query: 545
effective length of database: 1,977,170
effective search space: 1077557650
effective search space used: 1077557650
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 57 (27.1 bits)
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