GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001709-TA|BGIBMGA001709-PA|undefined
         (622 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56336| Best HMM Match : Ag332 (HMM E-Value=5.1)                     33   0.69 
SB_3044| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.69 
SB_948| Best HMM Match : Sec62 (HMM E-Value=9.5)                       32   1.6  
SB_12347| Best HMM Match : HLH (HMM E-Value=3.8e-21)                   32   1.6  
SB_4088| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   1.6  
SB_29518| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.1  
SB_13816| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.1  
SB_45915| Best HMM Match : CRAM_rpt (HMM E-Value=9.1e-20)              31   2.8  
SB_15458| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.8  
SB_6936| Best HMM Match : TP2 (HMM E-Value=1.1)                        30   4.8  
SB_50158| Best HMM Match : Toxin_16 (HMM E-Value=2)                    29   8.4  
SB_43816| Best HMM Match : DUF755 (HMM E-Value=6.3)                    29   8.4  
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   8.4  
SB_12729| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.3e-08)        29   8.4  
SB_9982| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   8.4  

>SB_56336| Best HMM Match : Ag332 (HMM E-Value=5.1)
          Length = 366

 Score = 33.1 bits (72), Expect = 0.69
 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 50  EKLKRQKPLEDVPEQRQETSEICEIVPQRNVMEAPRLVEVGRQWSLPEYTTP-ESSRKIE 108
           E+ K+++P+E+ P+Q +   E  E V + + ++AP  ++    +  P+   P E   K E
Sbjct: 133 EEPKQEEPVEEEPKQEEPFEEQKEAVAEESKVDAPVAIDTSGVYEKPKQEQPVEEKSKQE 192

Query: 109 E 109
           E
Sbjct: 193 E 193


>SB_3044| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1170

 Score = 33.1 bits (72), Expect = 0.69
 Identities = 15/38 (39%), Positives = 23/38 (60%)

Query: 363 LVAAGNDGEALSASVEALKAHCRKLEADNAVTQAALEQ 400
           L AA  D EALS ++   +A+C++LE  N   Q  +E+
Sbjct: 311 LEAANRDSEALSLALSESEAYCKELELHNKTKQERIEK 348


>SB_948| Best HMM Match : Sec62 (HMM E-Value=9.5)
          Length = 306

 Score = 31.9 bits (69), Expect = 1.6
 Identities = 16/39 (41%), Positives = 19/39 (48%)

Query: 44  YYYGDLEKLKRQKPLEDVPEQRQETSEICEIVPQRNVME 82
           YYY DLEK  R+ P +D      E  E C+I    N  E
Sbjct: 189 YYYYDLEKKSRKPPEKDPERFTYENPEYCDIPELENNRE 227


>SB_12347| Best HMM Match : HLH (HMM E-Value=3.8e-21)
          Length = 143

 Score = 31.9 bits (69), Expect = 1.6
 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 6/91 (6%)

Query: 265 VTDCDTSLNLSERDSELCLTTARCCRAARQPRSAGDSCERQRGSPASRGRSETRRAKLAS 324
           V++ D+  +L   DSE     +R  R  R+PR  G S +RQ  +   R R+ +  A   +
Sbjct: 16  VSEDDSDSSLKGSDSE---NASRLKRKRRKPRLTGLSKQRQAANARERNRTHSVNAAFNA 72

Query: 325 RVRLRTADSRDPSTDEAWSLEAERLAQDVCA 355
              LR     +PS  +   +E  RLA    A
Sbjct: 73  ---LRLLIPTEPSDRKLSKIETLRLASSYIA 100


>SB_4088| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 895

 Score = 31.9 bits (69), Expect = 1.6
 Identities = 16/39 (41%), Positives = 19/39 (48%)

Query: 44  YYYGDLEKLKRQKPLEDVPEQRQETSEICEIVPQRNVME 82
           YYY DLEK  R+ P +D      E  E C+I    N  E
Sbjct: 779 YYYYDLEKKSRKPPEKDPERFTYENPEYCDIPELENNRE 817


>SB_29518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 31.5 bits (68), Expect = 2.1
 Identities = 15/39 (38%), Positives = 19/39 (48%)

Query: 44  YYYGDLEKLKRQKPLEDVPEQRQETSEICEIVPQRNVME 82
           YYY DL+K  R+ P +D      E  E C+I    N  E
Sbjct: 372 YYYYDLKKKSRKPPEKDPERHTYENPEYCDIPELENNYE 410


>SB_13816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 31.5 bits (68), Expect = 2.1
 Identities = 15/39 (38%), Positives = 19/39 (48%)

Query: 44  YYYGDLEKLKRQKPLEDVPEQRQETSEICEIVPQRNVME 82
           YYY DL+K  R+ P +D      E  E C+I    N  E
Sbjct: 139 YYYYDLKKKSRKPPEKDPERHTYENPEYCDIPELENNYE 177


>SB_45915| Best HMM Match : CRAM_rpt (HMM E-Value=9.1e-20)
          Length = 359

 Score = 31.1 bits (67), Expect = 2.8
 Identities = 29/139 (20%), Positives = 54/139 (38%), Gaps = 9/139 (6%)

Query: 192 ECESTTQPAEELDNDADPSRTEQNDTSSLASPAELXXXXXXXXXXXXXXXXXXXXXXHSR 251
           ECEST++ A   + ++        ++  +     +                       +R
Sbjct: 114 ECESTSECASTTECESTRECESTKESVRVRQSVRVRQSESTRECESTSECESTRECESAR 173

Query: 252 PCNPTIEVTSSQQVTDCDTSLNL-SERDSELCLTTARCCRAARQPRSAGDSCERQRGSPA 310
            C  T E  S+   T+C+++    S R+ E    + R C + R+  S  + CE  R   +
Sbjct: 174 ECESTRECEST---TECESTRECESARECE----STRECESTRECESRTE-CESTRECES 225

Query: 311 SRGRSETRRAKLASRVRLR 329
           +R    TR  ++   VR+R
Sbjct: 226 TREYESTREVRVRESVRVR 244


>SB_15458| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 662

 Score = 31.1 bits (67), Expect = 2.8
 Identities = 15/52 (28%), Positives = 27/52 (51%)

Query: 366 AGNDGEALSASVEALKAHCRKLEADNAVTQAALEQATDVVHRLYTFCSVQES 417
           AGN  ++L + +  LKA  R+LE D    + + ++   +V  L T    ++S
Sbjct: 540 AGNLLDSLQSHIRDLKARIRELEEDKRTLEGSAQEQDQIVEELITQLEYEKS 591


>SB_6936| Best HMM Match : TP2 (HMM E-Value=1.1)
          Length = 256

 Score = 30.3 bits (65), Expect = 4.8
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 292 ARQPRSAGDSCERQRGSPASRGRSETRRAKLASRVRLRTADSRDPSTDEAWSLEAERLAQ 351
           +  P S G+S +RQR SP  R R   R+ +   +      +S  P  D+    E +++A+
Sbjct: 144 SESPSSDGESPDRQRPSPHRRSRPRNRKDRQLDKKTKTLPNSYAPKRDK--PRERKKVAR 201

Query: 352 D 352
           D
Sbjct: 202 D 202


>SB_50158| Best HMM Match : Toxin_16 (HMM E-Value=2)
          Length = 746

 Score = 29.5 bits (63), Expect = 8.4
 Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 18/114 (15%)

Query: 254 NPTIEVTSSQQVTD---CDTSLNLSERDSELCLTTA-----RCCRAARQPRS------AG 299
           NP+      Q V +    D SLN  E ++ +  +T      + C   ++P +       G
Sbjct: 256 NPSASAQKLQDVLEDLSFDNSLNAFEAEAHIVFSTVTMPREKKCPGCKKPVNDHDFGVPG 315

Query: 300 DSCERQRGSPASRGRSETRRAK----LASRVRLRTADSRDPSTDEAWSLEAERL 349
             C+   G P  RG S TR  +    LA+ V+  TA+ +    D A S ++  L
Sbjct: 316 KHCDGPGGVPEIRGNSTTRNDELLNSLAAAVQTLTAEVQSLKADHASSRQSHSL 369


>SB_43816| Best HMM Match : DUF755 (HMM E-Value=6.3)
          Length = 539

 Score = 29.5 bits (63), Expect = 8.4
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 170 ESSWRYSSL-RPVTAAPIPGQNDECESTTQPAEELDNDADPSR 211
           +  W  S+L RP+   PI   +D+  S T+PA EL    D ++
Sbjct: 183 QEQWSSSTLDRPLEHEPIDDLHDDVNSPTEPATELRPHIDSTK 225


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 29.5 bits (63), Expect = 8.4
 Identities = 13/27 (48%), Positives = 18/27 (66%)

Query: 68   TSEICEIVPQRNVMEAPRLVEVGRQWS 94
            T ++CE VP RN   +PR+V V R+ S
Sbjct: 3549 TDKLCESVPARNPHYSPRVVHVERKTS 3575


>SB_12729| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.3e-08)
          Length = 1183

 Score = 29.5 bits (63), Expect = 8.4
 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 2/68 (2%)

Query: 367  GNDGEALSASVEALKAHCRKLEADNAVTQAALEQATDVVHRLYTFCSVQESWVVQLCAAL 426
            G D ++++   EA ++ C+ L     + QA L++   ++HRLY   S     V++L   L
Sbjct: 1078 GTDVKSVNGK-EAGESDCQ-LRKQLEIAQAQLKKCEKIIHRLYAENSDLNKTVLKLEGKL 1135

Query: 427  RADERTVE 434
            ++  R+ E
Sbjct: 1136 KSSSRSQE 1143


>SB_9982| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 29.5 bits (63), Expect = 8.4
 Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 5/102 (4%)

Query: 290 RAARQPRSAGDSCERQRGSPASRGRSETRRAKLASRV---RLRTADSRDPSTDEAWSLEA 346
           RA   P  A  + ++ R     + RS +R+ K+A +V   R+R       +  +  + E 
Sbjct: 15  RAGLAPGPAA-ALDQARKRQDIKSRSRSRKKKMADKVLPQRVRDLVPESQAYMDLLAFER 73

Query: 347 ERLAQDVCAQADLREALVAAGNDGEALSASVEALKAHCRKLE 388
           +  A  +  + D++EAL     DGEAL  S E L+   R LE
Sbjct: 74  KLDATIMRKRMDIQEALKRPIKDGEALVPSWE-LRVEGRILE 114


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.314    0.127    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,925,912
Number of Sequences: 59808
Number of extensions: 596704
Number of successful extensions: 1618
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1597
Number of HSP's gapped (non-prelim): 29
length of query: 622
length of database: 16,821,457
effective HSP length: 86
effective length of query: 536
effective length of database: 11,677,969
effective search space: 6259391384
effective search space used: 6259391384
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 63 (29.5 bits)