Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001709-TA|BGIBMGA001709-PA|undefined
(622 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 32 1.4
U80952-5|AAB38092.1| 424|Caenorhabditis elegans Hypothetical pr... 31 1.8
U29488-2|AAA68774.2| 422|Caenorhabditis elegans Hypothetical pr... 30 4.2
AF100656-4|AAF99969.1| 159|Caenorhabditis elegans Hypothetical ... 30 4.2
AC024206-4|AAK67240.1| 564|Caenorhabditis elegans Hypothetical ... 30 5.6
AF106592-4|AAK21366.1| 786|Caenorhabditis elegans Hypothetical ... 29 7.4
Z73976-8|CAI79223.1| 215|Caenorhabditis elegans Hypothetical pr... 29 9.7
Z69646-1|CAA93473.3| 1209|Caenorhabditis elegans Hypothetical pr... 29 9.7
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 31.9 bits (69), Expect = 1.4
Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 6/102 (5%)
Query: 290 RAARQPRSAGDSCERQRGSPASRGRSETRRAKLASRVR------LRTADSRDPSTDEAWS 343
R +R PR + R+R R RS R++ +SR R R ++SR PS
Sbjct: 89 RRSRSPRRRSRTPPRRRSRSRDRKRSRRSRSRSSSRSRSPVRESRRRSESRSPSPKRDLK 148
Query: 344 LEAERLAQDVCAQADLREALVAAGNDGEALSASVEALKAHCR 385
EA R + A+ R + +G SV ++H R
Sbjct: 149 REASRSRSPLPAKDRSRTRSGSPPKNGGDRKRSVSRGRSHSR 190
>U80952-5|AAB38092.1| 424|Caenorhabditis elegans Hypothetical
protein F54H5.2 protein.
Length = 424
Score = 31.5 bits (68), Expect = 1.8
Identities = 20/78 (25%), Positives = 33/78 (42%)
Query: 314 RSETRRAKLASRVRLRTADSRDPSTDEAWSLEAERLAQDVCAQADLREALVAAGNDGEAL 373
+S T+ S+ ++ A + E S E + AQ + D++E L E +
Sbjct: 324 KSITKSPNQLSKETIKKASREKTLSKEKTSKEDIKTAQKTSIEKDVKEKLSKEMASKEKI 383
Query: 374 SASVEALKAHCRKLEADN 391
S S E + K+E DN
Sbjct: 384 SLSAEKINMSAEKIEEDN 401
>U29488-2|AAA68774.2| 422|Caenorhabditis elegans Hypothetical
protein C56C10.6 protein.
Length = 422
Score = 30.3 bits (65), Expect = 4.2
Identities = 20/84 (23%), Positives = 36/84 (42%)
Query: 308 SPASRGRSETRRAKLASRVRLRTADSRDPSTDEAWSLEAERLAQDVCAQADLREALVAAG 367
S ++ +S T+ S+ ++ A + E S E + A+ + D++E L
Sbjct: 316 SKSTPSKSVTKSPAQLSKETVKKASREKTLSKEKTSKEDIKTARKTSIEKDVKEKLSKDM 375
Query: 368 NDGEALSASVEALKAHCRKLEADN 391
E +S S E + K+E DN
Sbjct: 376 ASKEKISLSAEKINMSAEKIEEDN 399
>AF100656-4|AAF99969.1| 159|Caenorhabditis elegans Hypothetical
protein F49F1.5 protein.
Length = 159
Score = 30.3 bits (65), Expect = 4.2
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 60 DVPEQRQETSEICEI-VPQRNVMEAPRLVEVGRQWSLPEYTTPESSRKIEE 109
D P+ ++ E C I VP R + R V VG Q + + T+P++S E
Sbjct: 71 DDPKNSEQCQESCGICVPTRKITSTLRPVHVGTQTTTVKPTSPKTSSTASE 121
>AC024206-4|AAK67240.1| 564|Caenorhabditis elegans Hypothetical
protein Y74C9A.4b protein.
Length = 564
Score = 29.9 bits (64), Expect = 5.6
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 164 DEEISRESSWRYSSLRPVTAAPIPGQNDECESTTQPAEELDNDADPSRT-EQNDTSS 219
DE+ SR+ + L + A+P P + D+ E + EE A P R+ + +T+S
Sbjct: 8 DEDASRKENISDEGLNMLNASPEPMEEDDPEEQAEQEEETSRMARPIRSMRKRETTS 64
>AF106592-4|AAK21366.1| 786|Caenorhabditis elegans Hypothetical
protein D1037.1 protein.
Length = 786
Score = 29.5 bits (63), Expect = 7.4
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 6/100 (6%)
Query: 293 RQPRSAGDSCERQRGSPASRGRSETR--RAKLASRVRLRTADSRD-PSTDEAWSLEAERL 349
R+ RS R+R SR +ETR R + SR R R+ + ++ S S E +
Sbjct: 266 RRSRSRDTHRTRRRSPERSRRSTETRNERPERPSRWRSRSRERKEYDSYRRRRSRSREVI 325
Query: 350 AQD-VCAQADLREALVAAGNDGEALSASVEALKAHCRKLE 388
++ + A A + A + + D + SAS+E +C+KL+
Sbjct: 326 DKEKLLAIAKTKRAEMMSNGDRD--SASIEDFVTYCKKLQ 363
>Z73976-8|CAI79223.1| 215|Caenorhabditis elegans Hypothetical
protein T07C12.14 protein.
Length = 215
Score = 29.1 bits (62), Expect = 9.7
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 361 EALVAAGNDGEALSASVEALKAHCRKLEADNAVTQAALEQATD 403
+A VAAG D E L+A EA A +KL+ + A + + Q D
Sbjct: 79 KANVAAGTDPELLAAKREAEDALSKKLDINQAKYELKMAQILD 121
>Z69646-1|CAA93473.3| 1209|Caenorhabditis elegans Hypothetical
protein F57C7.1a protein.
Length = 1209
Score = 29.1 bits (62), Expect = 9.7
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 260 TSSQQVTDCDTSLNLSERDSELCLTTARCCRAARQPRSAGDSCERQRGSPASRGRSETRR 319
T +QV T L SE+ ++L R +A P S +QRG ++RGR +T
Sbjct: 376 TLEKQVLSQLTQLPRSEKPADLADHHRRGMFSASTP-SGKTKGPKQRGRKSTRGRKKTSL 434
Query: 320 AKLASRVRLRTADSRDPSTDEAWSLEAERLAQD 352
+ AS + + D D + DE+ +++ D
Sbjct: 435 PRGASTFKDESVD--DNNDDESSKVDSINFDDD 465
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.314 0.127 0.367
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,094,687
Number of Sequences: 27539
Number of extensions: 418477
Number of successful extensions: 1092
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1087
Number of HSP's gapped (non-prelim): 9
length of query: 622
length of database: 12,573,161
effective HSP length: 86
effective length of query: 536
effective length of database: 10,204,807
effective search space: 5469776552
effective search space used: 5469776552
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 62 (29.1 bits)
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