GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001709-TA|BGIBMGA001709-PA|undefined
         (622 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13260.1 68418.m01523 expressed protein                             33   0.56 
At1g09470.1 68414.m01059 expressed protein ; expression supporte...    32   0.99 
At2g27350.3 68415.m03293 OTU-like cysteine protease family prote...    31   1.7  
At1g70430.1 68414.m08103 protein kinase family protein contains ...    31   2.3  
At4g30790.1 68417.m04362 expressed protein                             30   4.0  
At4g07990.1 68417.m01280 DNAJ heat shock N-terminal domain-conta...    29   7.0  
At1g01280.1 68414.m00044 cytochrome P450 family protein similar ...    29   9.2  

>At5g13260.1 68418.m01523 expressed protein
          Length = 537

 Score = 33.1 bits (72), Expect = 0.56
 Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 1/111 (0%)

Query: 300 DSCERQRGSPASRGRSETRRAKLASRVRLRTADSRDPSTDEAWSLEAERLAQDVCAQADL 359
           D  + +  S   + R E  + K A   R+R  + +  S  E  SLEA+ L++   A    
Sbjct: 198 DMLQEENDSILEKLRLEDEKCKEAE-ARVRELEKQVTSLGEGVSLEAKLLSRKEAALRQR 256

Query: 360 REALVAAGNDGEALSASVEALKAHCRKLEADNAVTQAALEQATDVVHRLYT 410
             AL  A  + +  +    AL++     + + A   A L+ A   V+ L T
Sbjct: 257 EAALKDARQNRDGTNRETTALRSQVETAKLETAAIVAQLQGAESEVNGLRT 307


>At1g09470.1 68414.m01059 expressed protein ; expression supported
           by MPSS
          Length = 336

 Score = 32.3 bits (70), Expect = 0.99
 Identities = 31/138 (22%), Positives = 55/138 (39%), Gaps = 5/138 (3%)

Query: 273 NLSERDSELCLTTARCCRAARQPRSAGDSCERQRGSPA-SRGRSETRRAKLASRVRLRTA 331
           +LSE+               ++ R+     ER     A SR  +ETR  ++   +     
Sbjct: 16  DLSEKKQSFRRNVVSLATELKEARTRLAEQERSCSKEAMSRQEAETRVKRMEDEMHELAK 75

Query: 332 DSRDPSTD-EAWSLEAERLAQDVCAQADLREALVAAGNDGEALSASVEALKAHCRKLEAD 390
           +  +      A  +  E+  +++   AD++  L A     EA + S E+  +HCR L   
Sbjct: 76  ELNEKVEQIRASDVATEKFVKEL---ADIKSQLAATHATAEASALSAESAHSHCRVLSKQ 132

Query: 391 NAVTQAALEQATDVVHRL 408
                 +L++  D V RL
Sbjct: 133 LHERTGSLKEHEDQVTRL 150


>At2g27350.3 68415.m03293 OTU-like cysteine protease family protein
           contains Pfam profile PF02338: OTU-like cysteine
           protease
          Length = 506

 Score = 31.5 bits (68), Expect = 1.7
 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 70  EICEIVPQRNVMEAPRLVEVGRQWSLPEYTTPESSRKIEETYSTAGTFP 118
           E+ E   +R+VMEA R  E   +WS P     ESS    ET S+  T P
Sbjct: 390 ELTEKEIERSVMEASR-AEYLMEWSKPRIGPKESSTSNAETSSSGATGP 437


>At1g70430.1 68414.m08103 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 594

 Score = 31.1 bits (67), Expect = 2.3
 Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 3/77 (3%)

Query: 37  ELSRSTAYYYGDLEKLKRQKPLEDVPEQRQETSEICEIVPQRNVMEAPRLVEVGRQWSLP 96
           E  R  + +  DLE L+RQ  L  +P +    SEI E+    +V +   +++  R  ++P
Sbjct: 315 EYMRGISAWNFDLEALRRQASLVIIPNEEIYNSEIQELNRNGDVPKGKPVIQ--RSQTMP 372

Query: 97  -EYTTPESSRKIEETYS 112
            EY + ++S  + E+ S
Sbjct: 373 LEYFSEKASDMVSESSS 389


>At4g30790.1 68417.m04362 expressed protein
          Length = 1148

 Score = 30.3 bits (65), Expect = 4.0
 Identities = 38/152 (25%), Positives = 58/152 (38%), Gaps = 9/152 (5%)

Query: 267 DCDTSLNLSERDSELCLTTARCCRAARQPRSAGDSCERQRGSPASRGRSETRRAK-LASR 325
           + +T+  L E     C     C   AR+          +R S  +  R+   + + L  R
Sbjct: 848 ELETNQKLLEESQMNCAHLENCLHEAREEAQTHLCAADRRASQYTALRASAVKMRGLFER 907

Query: 326 VRLRTADSRDPSTDEAWSLE--AERLAQDVCAQAD-----LREALVAAGNDGEALSASVE 378
            R     +     D A SL   A+ LA  V    D      R+ +    +    LS   E
Sbjct: 908 FRSSVC-AGSGIADFADSLRTLAQALANSVNENEDDGTTEFRKCIRVLADKVSFLSKHRE 966

Query: 379 ALKAHCRKLEADNAVTQAALEQATDVVHRLYT 410
            L   C+ LEA +  T+  LE+  ++V  LYT
Sbjct: 967 ELLEKCQNLEATSEQTRKDLEEKKELVKTLYT 998


>At4g07990.1 68417.m01280 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|Q9QYI5 DnaJ
           homolog subfamily B member 10 Mus musculus ; contains
           Pfam profile PF00226 DnaJ domain
          Length = 347

 Score = 29.5 bits (63), Expect = 7.0
 Identities = 13/35 (37%), Positives = 21/35 (60%)

Query: 39  SRSTAYYYGDLEKLKRQKPLEDVPEQRQETSEICE 73
           SR+T Y   +++K  R+K LE  P+Q Q+   + E
Sbjct: 293 SRATPYTEAEIKKAFREKALEFHPDQNQDNKIVAE 327


>At1g01280.1 68414.m00044 cytochrome P450 family protein similar to
           cytochrome P450 GB:BAA92894 GI:7339658 from [ Petunia
           hybrida]
          Length = 510

 Score = 29.1 bits (62), Expect = 9.2
 Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 8/75 (10%)

Query: 351 QDVCAQADLREALVAAGNDGEALS---ASVEALKAH--CRKL--EADNAVTQAALEQATD 403
           +DV  +A +++ ++AA  D  A++   A  EA+K     RK+  E DN V    +   +D
Sbjct: 293 EDVEIKALIQD-MIAAATDTSAVTNEWAMAEAIKQPRVMRKIQEELDNVVGSNRMVDESD 351

Query: 404 VVHRLYTFCSVQESW 418
           +VH  Y  C V+E++
Sbjct: 352 LVHLNYLRCVVRETF 366


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.314    0.127    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,395,840
Number of Sequences: 28952
Number of extensions: 386742
Number of successful extensions: 931
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 927
Number of HSP's gapped (non-prelim): 8
length of query: 622
length of database: 12,070,560
effective HSP length: 85
effective length of query: 537
effective length of database: 9,609,640
effective search space: 5160376680
effective search space used: 5160376680
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 62 (29.1 bits)