Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001708-TA|BGIBMGA001708-PA|undefined
(328 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45286| Best HMM Match : GRIP (HMM E-Value=3.6e-08) 32 0.56
SB_31688| Best HMM Match : WD40 (HMM E-Value=3.3e-10) 29 4.0
SB_54822| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_35601| Best HMM Match : PKD_channel (HMM E-Value=0) 29 6.9
SB_46036| Best HMM Match : PSRT (HMM E-Value=1) 29 6.9
SB_45628| Best HMM Match : DUF1639 (HMM E-Value=0.19) 29 6.9
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19) 29 6.9
>SB_45286| Best HMM Match : GRIP (HMM E-Value=3.6e-08)
Length = 800
Score = 32.3 bits (70), Expect = 0.56
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 170 ETKVSNIKEAITVFEKF-LDDFESLHLSKENNPYLSLG-VVRAAEQLAGESVTEQQKSFI 227
ETK+S + E + +EK D E +H KE L GE V + +
Sbjct: 372 ETKLSELSEVVGSYEKLRFHDQEVIHKLKERLQQLDTEKTALTLHSPVGEGVPDNNIQTV 431
Query: 228 AAYSSVNGEYKRLRTV 243
A S+ + ++LRTV
Sbjct: 432 AEIDSLRDQVQKLRTV 447
>SB_31688| Best HMM Match : WD40 (HMM E-Value=3.3e-10)
Length = 841
Score = 29.5 bits (63), Expect = 4.0
Identities = 20/118 (16%), Positives = 51/118 (43%), Gaps = 5/118 (4%)
Query: 169 DETKVSNIKEAITVFEKFLDDFESLHLSKENNPYLSLGVVRAAEQLAGESVTEQQKSFIA 228
++ ++++ ++++ + D L + N+ S + ++ + +S+++
Sbjct: 118 NQPPINHLLQSVSCTQLDSDQVSQYILRQSNSQSQSSSNPSSQSEMLSSQPNQLSESYLS 177
Query: 229 AYSSVNGEYKRLRTVEESEGGLTWDI-----VRNNALKPLKATHAEAKLFNEEGEPTP 281
S+ N L +V +S+ + + +N L+P T A + L NEE + P
Sbjct: 178 NQSAPNQSENSLSSVNQSQTASNLSLNQSETIVSNFLEPASTTQASSSLLNEEVDVMP 235
>SB_54822| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1652
Score = 29.1 bits (62), Expect = 5.2
Identities = 28/139 (20%), Positives = 52/139 (37%), Gaps = 4/139 (2%)
Query: 189 DFESLHLSKENNPYLSLGVVRAAEQLAGESVTEQQKSFIAAYSSVNGEYKRLRTVEESEG 248
D E +N P + V + T+++K +A++S E+ S
Sbjct: 571 DIEGDGNDHKNKPSMKTAAVSDQPHMLSSRGTQRRKPIVASFSEKGSEHTLTNNSRHSYA 630
Query: 249 GLTWDI-VRNNALKPLKATHAEAKLFNEEGEPTPEHLELILWAYSP--EAARLKKCLPEV 305
+ + R+ + +K+T E + E G TP+ E + E + L C P+V
Sbjct: 631 SSNYTLKARSRRRRNMKST-GEEETKEEPGLVTPKAYEAFKRLLNDCFEQSELLACDPDV 689
Query: 306 ETEVSRKRRSSAQEESPAK 324
+ + K + S K
Sbjct: 690 TSSANVKENGYFKCSSDVK 708
>SB_35601| Best HMM Match : PKD_channel (HMM E-Value=0)
Length = 2497
Score = 28.7 bits (61), Expect = 6.9
Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Query: 142 DGRDPDYQRLAVKGLIGRAKRVLTCTRDETKVSNIKEAITVFEKFLDDFESLHLSKEN-N 200
D +DPD A K L+ +L DE KV EA +K + + L +N
Sbjct: 848 DDQDPDEMEKAAKNLLHGTGNILAAASDEAKVYG-TEASKTTDKTKQESKERALQADNLI 906
Query: 201 PYLSLGVVRAAEQLAGESVT 220
LS V+ E AGES T
Sbjct: 907 ARLSRSVLGRKE--AGESPT 924
>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
Length = 878
Score = 28.7 bits (61), Expect = 6.9
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 296 ARLKKCLPEVETE-VSRKRRSSAQEESPAKKKK 327
+R K+ P E E SR+ SS+ E+SP KKK+
Sbjct: 82 SRKKRRSPSSEDEPASRRHASSSPEDSPPKKKR 114
>SB_45628| Best HMM Match : DUF1639 (HMM E-Value=0.19)
Length = 662
Score = 28.7 bits (61), Expect = 6.9
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 7/95 (7%)
Query: 184 EKFLDDFESLHLSK--ENNPYLSLGVVRAAEQLAGESVTEQQKSFIAAYSSVNGEYKRLR 241
E+ DD +L++ + E +LGV AEQ E+ +E ++ YS++ G + +
Sbjct: 519 ERISDDEFALYVKRASEEETLTALGVQAIAEQYNSETDSETEEEIPIQYSAITGRDPK-K 577
Query: 242 TVEESEGGLTWDIVRNNALKPLKATHAEA-KLFNE 275
+E E + W + R A + +K A KL +E
Sbjct: 578 AYKERERNI-WIMYR--AYRGMKKAKRRAQKLMDE 609
>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
Length = 3107
Score = 28.7 bits (61), Expect = 6.9
Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 10/145 (6%)
Query: 177 KEAITVFEKFLDDFESLHLSKENNPYLSLGVVRAAEQLAGESVTEQQKSFIAAYSSVNGE 236
+E ++ + LD E+++ + EN +L Q+ E T+Q+ + S NG+
Sbjct: 598 REELSAKNQQLDKLENVNKALENRVD-ALKQEYTKTQVTTEVSTKQKDALERELSEANGK 656
Query: 237 YKRLRTVEESEGGLTWDIVRNNALKPLKATHAEAKLFNEEGEPTPEHLELILWAYSPEAA 296
+ L E+ G+ ++ + A LK E L ++ E T E
Sbjct: 657 NRELEEACENLAGIRDELEKELAGSKLKIQSLENSL-DKANEKTSE--------AEHNNG 707
Query: 297 RLKKCLPEVETEVSRKRRSSAQEES 321
RL+K + E+E + R Q E+
Sbjct: 708 RLRKTISELENNLYALRNKHVQMEN 732
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.313 0.131 0.367
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,961,940
Number of Sequences: 59808
Number of extensions: 340594
Number of successful extensions: 766
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 763
Number of HSP's gapped (non-prelim): 10
length of query: 328
length of database: 16,821,457
effective HSP length: 82
effective length of query: 246
effective length of database: 11,917,201
effective search space: 2931631446
effective search space used: 2931631446
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 60 (28.3 bits)
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