Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001708-TA|BGIBMGA001708-PA|undefined
         (328 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          26   0.52 
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    25   0.90 
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    23   2.8  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   3.7  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          23   3.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   6.4  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   6.4  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 25.8 bits (54), Expect = 0.52
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 3/66 (4%)

Query: 191 ESLHLSKEN-NPYLSLGVVRAAE--QLAGESVTEQQKSFIAAYSSVNGEYKRLRTVEESE 247
           E + LS+ N  P+    +  A E  +L   S+ +    +   YSS+ G +KR +  E + 
Sbjct: 560 EGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPTV 619

Query: 248 GGLTWD 253
           G ++ D
Sbjct: 620 GEISQD 625


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 25.0 bits (52), Expect = 0.90
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 138 LKVLDGRDPDYQRLAVKGLIGRAKRVLTCTRD-ETKVSNIKEAITVFEKFL 187
           LKVL    P+  R    GL+ +AKR +    + E K +  KE ++  ++FL
Sbjct: 71  LKVLVPLGPETSRHTTLGLLTKAKRFIKSLEERERKHAVHKEQLSREQRFL 121


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 12/44 (27%), Positives = 21/44 (47%)

Query: 165 TCTRDETKVSNIKEAITVFEKFLDDFESLHLSKENNPYLSLGVV 208
           T +   T  S      T   +F+++ + + LSKE     +LGV+
Sbjct: 289 TTSSRRTTGSRAAATTTTVYQFIEERQRISLSKERRAARTLGVI 332


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 11/44 (25%), Positives = 22/44 (50%)

Query: 8   DTGFGFKDKAKAEDTLRLLEEHDLNYRRLTVRGLLGRAKRVLSM 51
           + G   +  AKA++T+    ++ LN++  T   ++   K V  M
Sbjct: 470 NNGVSIQSHAKAKNTMIKARQYRLNHKPFTYHIVVNSDKNVKGM 513


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 11/44 (25%), Positives = 22/44 (50%)

Query: 8   DTGFGFKDKAKAEDTLRLLEEHDLNYRRLTVRGLLGRAKRVLSM 51
           + G   +  AKA++T+    ++ LN++  T   ++   K V  M
Sbjct: 96  NNGVSIQSHAKAKNTMIKARQYRLNHKPFTYHIVVNSDKNVKGM 139


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 11/46 (23%), Positives = 21/46 (45%)

Query: 154 KGLIGRAKRVLTCTRDETKVSNIKEAITVFEKFLDDFESLHLSKEN 199
           + L+GR +       D+ ++    E++  FE  LD F    +  +N
Sbjct: 181 RALLGRFQTTSQNLEDDVEIKVQVESVIEFEPGLDSFTQQLIEMKN 226


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 10/37 (27%), Positives = 17/37 (45%)

Query: 161 KRVLTCTRDETKVSNIKEAITVFEKFLDDFESLHLSK 197
           +RV+   R+  +  ++ EA     K +    S  LSK
Sbjct: 254 QRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSK 290


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.131    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,607
Number of Sequences: 429
Number of extensions: 2776
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 7
length of query: 328
length of database: 140,377
effective HSP length: 58
effective length of query: 270
effective length of database: 115,495
effective search space: 31183650
effective search space used: 31183650
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 44 (21.8 bits)