Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001708-TA|BGIBMGA001708-PA|undefined
         (328 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g62490.1 68414.m07051 mitochondrial transcription termination...    30   1.9  
At3g28580.1 68416.m03568 AAA-type ATPase family protein contains...    29   4.3  
At5g54670.1 68418.m06807 kinesin-like protein C (KATC)                 29   5.7  
At4g24190.2 68417.m03473 shepherd protein (SHD) / clavata format...    28   9.9  
At4g24190.1 68417.m03472 shepherd protein (SHD) / clavata format...    28   9.9  
At3g49830.1 68416.m05448 DNA helicase-related similar to DNA hel...    28   9.9  
At2g07630.1 68415.m00881 hypothetical protein                          28   9.9  

>At1g62490.1 68414.m07051 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 334

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 11  FGFKDKAKAEDTLRLLEEHDLNYRRLTVRGLLG-RAKRVLSM 51
           F F+DKA  +  L LL  H     ++++  LLG R  + LS+
Sbjct: 122 FRFEDKANPDSVLSLLRSHGFTVSQISIPKLLGKRGHKTLSL 163


>At3g28580.1 68416.m03568 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 500

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 5/93 (5%)

Query: 238 KRLRTVEESEGGLTWDIVRNNALKPLKATHA---EAKLFNEEGEPTPEHLELILWAYSPE 294
           K    VEESE  +  +I R   ++ +K T A   E  L   E E     L+ ++ A   E
Sbjct: 404 KNYLDVEESE--MFEEIKRLLEVEEIKMTPADVGENLLPKSEKEGGETCLKRLIEALKEE 461

Query: 295 AARLKKCLPEVETEVSRKRRSSAQEESPAKKKK 327
               KK + E E E  RK+    + E+  +KKK
Sbjct: 462 KEEAKKKVEEEEEEKQRKKEKVKEIEAEKEKKK 494


>At5g54670.1 68418.m06807 kinesin-like protein C (KATC)
          Length = 754

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 19/79 (24%), Positives = 38/79 (48%)

Query: 176 IKEAITVFEKFLDDFESLHLSKENNPYLSLGVVRAAEQLAGESVTEQQKSFIAAYSSVNG 235
           +K A+ + EK   D E    +KE    + +  +R   +     +  +Q   +AA  S+  
Sbjct: 99  LKNALELNEKHCVDMEVSLKNKEEELNMIIEELRKNFESVQVQLAREQTEKLAANDSLGK 158

Query: 236 EYKRLRTVEESEGGLTWDI 254
           E +   +VE+++ GLT ++
Sbjct: 159 EKEARLSVEKAQAGLTEEL 177


>At4g24190.2 68417.m03473 shepherd protein (SHD) / clavata formation
           protein, putative nearly identical to SHEPHERD
           [Arabidopsis thaliana] GI:19570872; contains Pfam
           profiles PF02518: ATPase, histidine kinase-, DNA gyrase
           B-, and HSP90-like domain protein, PF00183: Hsp90
           protein
          Length = 823

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 25/105 (23%), Positives = 50/105 (47%), Gaps = 7/105 (6%)

Query: 157 IGRAKRVLTCTRDET----KVSNIKEAITVFEKFLDDFESLHLSKENNPYLSLGVVRAAE 212
           +GR   +    RDE     + S +KE +  + +F++   SL  SKE    + +    +A+
Sbjct: 242 LGRGTEIRLHLRDEAGEYLEESKLKELVKRYSEFINFPISLWASKEVETEVPVEEDESAD 301

Query: 213 QLAGESVTEQQKSFIAAYSSVNGEYKRLRTVEESEGGLTWDIVRN 257
           +    + TE++K   A     +GE K+ +T +  E    W+++ +
Sbjct: 302 EETETTSTEEEKEEDA--EEEDGE-KKQKTKKVKETVYEWELLND 343


>At4g24190.1 68417.m03472 shepherd protein (SHD) / clavata formation
           protein, putative nearly identical to SHEPHERD
           [Arabidopsis thaliana] GI:19570872; contains Pfam
           profiles PF02518: ATPase, histidine kinase-, DNA gyrase
           B-, and HSP90-like domain protein, PF00183: Hsp90
           protein
          Length = 823

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 25/105 (23%), Positives = 50/105 (47%), Gaps = 7/105 (6%)

Query: 157 IGRAKRVLTCTRDET----KVSNIKEAITVFEKFLDDFESLHLSKENNPYLSLGVVRAAE 212
           +GR   +    RDE     + S +KE +  + +F++   SL  SKE    + +    +A+
Sbjct: 242 LGRGTEIRLHLRDEAGEYLEESKLKELVKRYSEFINFPISLWASKEVETEVPVEEDESAD 301

Query: 213 QLAGESVTEQQKSFIAAYSSVNGEYKRLRTVEESEGGLTWDIVRN 257
           +    + TE++K   A     +GE K+ +T +  E    W+++ +
Sbjct: 302 EETETTSTEEEKEEDA--EEEDGE-KKQKTKKVKETVYEWELLND 343


>At3g49830.1 68416.m05448 DNA helicase-related similar to DNA
           helicase GI:4521249 from [Mus musculus]
          Length = 473

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 164 LTCTRDETKVSNIKEAITVFEKFLDDFESL-HLSKENNPYL-SLGVVRAAEQLAGESVTE 221
           L C + + KV  I++   V+  FLD   S+ +L +  + YL S+ +    E  AGE    
Sbjct: 409 LACLKRKGKVVEIQDIERVYRLFLDTKRSMQYLVEHESEYLFSVPIKNTQEATAGEETEH 468

Query: 222 Q 222
           +
Sbjct: 469 E 469


>At2g07630.1 68415.m00881 hypothetical protein 
          Length = 458

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 145 DPDYQRLAVKGLIGRAKRVLTCTRDETKVSNIKEAI 180
           DPD    ++K LIG+  + L C  +E K   + ++I
Sbjct: 352 DPDILPDSIKNLIGKTYQYLVCVENENKRYQMHDSI 387


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.313    0.131    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,510,490
Number of Sequences: 28952
Number of extensions: 247204
Number of successful extensions: 635
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 630
Number of HSP's gapped (non-prelim): 9
length of query: 328
length of database: 12,070,560
effective HSP length: 81
effective length of query: 247
effective length of database: 9,725,448
effective search space: 2402185656
effective search space used: 2402185656
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 59 (27.9 bits)