GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001708-TA|BGIBMGA001708-PA|undefined
         (328 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomy...    27   4.8  
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    27   4.8  
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   6.4  
SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-tr...    26   6.4  
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p...    26   8.5  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    26   8.5  
SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1 |Schizosaccharo...    26   8.5  

>SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 4/85 (4%)

Query: 168 RDETKVSNIKEAIT---VFEKFLDDFESLHLSKENNPYLSLGVVRAAEQLAGESVTEQQK 224
           RD  K  ++KE I    +F + LDD E     K   P  S   +   +   GE V E  K
Sbjct: 192 RDLWKDESVKEVIRAHFLFLQLLDDEEPGMEFKRFYPVRSTPHIAILDPRTGERVKEWSK 251

Query: 225 SFIAA-YSSVNGEYKRLRTVEESEG 248
           SF  A +     ++    T++E+ G
Sbjct: 252 SFTPADFVIALNDFLEGCTLDETSG 276


>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/68 (20%), Positives = 33/68 (48%), Gaps = 5/68 (7%)

Query: 136 GTLKVLDGRDPDYQRLAVKGLIGRAKRVLTCTR-----DETKVSNIKEAITVFEKFLDDF 190
           G++ +   + P  + +A+K +  +  +V   TR        ++S  +  + +F+ ++D F
Sbjct: 48  GSVYLATTKTPSKEVVAIKSMKKKLAKVSDATRLREVHSLLRLSENENIVNIFDLYIDQF 107

Query: 191 ESLHLSKE 198
             LH+  E
Sbjct: 108 RCLHIVME 115


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 14/53 (26%), Positives = 26/53 (49%)

Query: 129 KDKSAAEGTLKVLDGRDPDYQRLAVKGLIGRAKRVLTCTRDETKVSNIKEAIT 181
           KD+ AAE  +  L+G + D + +AV   + +     T  +D +     KE ++
Sbjct: 156 KDRKAAEEAMNSLNGTEIDGRPIAVDWAVSKDAFEATTLKDASSEEENKEFVS 208


>SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-trans
           isomerase Wis2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 6/116 (5%)

Query: 165 TCTRDETKVSNIKEAITVFEKFLDDFE----SLHLSKENNPYLSLGVVRAAEQLAGESVT 220
           TCT+D+ +           E+F DD+E       + K  +    +   + A+Q    +V 
Sbjct: 166 TCTKDQIEAPKPDVTGDSLEEFPDDYEGDKSETAIFKIASDLKGIANKQFAQQNLDTAVA 225

Query: 221 EQQKS--FIAAYSSVNGEYKRLRTVEESEGGLTWDIVRNNALKPLKATHAEAKLFN 274
           + QK+  ++  Y   N + K      +    L + I  N AL  LK    +  + N
Sbjct: 226 KWQKALRYLMEYPVPNDDSKESPDFWKEYNALRYSIYANLALVALKQNKPQEAIRN 281


>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 723

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 272 LFNEEGEPTPEHLELILWAYSPEAARLKKCLPEV 305
           L  +EG+PTP H   +L     E  RL+K L ++
Sbjct: 425 LLEDEGKPTPSH--TLLHNRDHELERLEKVLKDI 456


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 6/86 (6%)

Query: 138 LKVLDGRDPDYQRLAVKGLIGRAKRVLTCTRDETKVSNIKEAITVFEKFLDDFESLHLSK 197
           L +L+ R  DY  L  K L G  K+      +E    N+++   + + +L+ F+S H S 
Sbjct: 45  LAILNDRIKDYL-LTCKELAGFFKK--RSILEEESGKNLQK---LAKSYLETFQSKHHSP 98

Query: 198 ENNPYLSLGVVRAAEQLAGESVTEQQ 223
           ++     +  +   EQLA  S+T Q+
Sbjct: 99  QSFSASVITSMEIHEQLANHSLTLQK 124


>SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 325

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 4/59 (6%)

Query: 189 DFESLHLSKENNPYLSLGVVRAAEQLAGESVTEQQKSFIAAYSSVNGEYKRLRTVEESE 247
           D E+L L +E+    S G+++ A+    +S +E  + F  A++  N EY++   V+ S+
Sbjct: 33  DDENLEL-EESREETSGGILKKAKT---QSFSESLERFRFAHAGSNNEYRKTDVVKNSD 87


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.131    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,246,876
Number of Sequences: 5004
Number of extensions: 46394
Number of successful extensions: 137
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 135
Number of HSP's gapped (non-prelim): 8
length of query: 328
length of database: 2,362,478
effective HSP length: 73
effective length of query: 255
effective length of database: 1,997,186
effective search space: 509282430
effective search space used: 509282430
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 54 (25.8 bits)