Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001708-TA|BGIBMGA001708-PA|undefined
(328 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1477 + 30408296-30409123,30409227-30410264 41 0.002
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 38 0.008
11_04_0125 + 13723966-13724011,13724282-13724430,13725100-137251... 33 0.24
11_02_0073 - 8020401-8020512,8020594-8020679,8020761-8020921,802... 31 1.3
02_02_0471 - 10714440-10714846,10714947-10715034,10715427-107155... 31 1.7
09_03_0179 - 13131404-13131514,13131834-13131920,13132316-131324... 30 2.2
05_07_0326 + 29274287-29274428,29274577-29275379 30 2.9
10_01_0078 - 1012031-1012084,1012998-1013105,1013610-1013661,101... 29 6.8
08_01_0087 + 630355-630403,630502-630699,631858-631943,632238-63... 29 6.8
01_05_0300 + 20624757-20625918,20626100-20627118,20627212-20627592 29 6.8
02_05_1041 - 33713561-33714564,33714844-33714904,33715640-337159... 28 9.0
>06_03_1477 + 30408296-30409123,30409227-30410264
Length = 621
Score = 40.7 bits (91), Expect = 0.002
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 145 DPDYQRLAVKG-LIGRAKRVLTCTRDETKVSNIKEAITVFEKFLDDFESLHLSKENNPYL 203
D Y+RLA+ G A+R+L C D +K+ E+ V +F +E ++++ E PY
Sbjct: 71 DDAYRRLALLGRAFQAARRLLRCCHDGSKIYLTLESEAVMGRFRGVYEKMNMALEGMPYA 130
Query: 204 SLGV 207
LGV
Sbjct: 131 ELGV 134
>01_06_0124 -
26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 38.3 bits (85), Expect = 0.008
Identities = 43/169 (25%), Positives = 75/169 (44%), Gaps = 16/169 (9%)
Query: 172 KVSNIKEAITVFEKFLDD-FESLHLSKENNPYLSLGVVRAAEQLAG-ESVTEQQKSFIAA 229
++SN++EA+ E D + L + +E L V + L ES EQ++S ++A
Sbjct: 804 QISNLQEAVENLEAAKTDMYNELTVCQEEKNAALLQVQQLEANLKNLESELEQKQSQVSA 863
Query: 230 YSSVNGEYKRL-----RTVEESEGGLTWDIVR-----NNALKPLKATHAEAKLFNEEGEP 279
N E + R +EE+ L +I++ AL L+ ++ K F EE E
Sbjct: 864 LEQANEELREKISSLERQLEEARSKLQDEIIKLQGEKERALDNLQQSNTSIKTFEEELEK 923
Query: 280 TPEHLELILWAYSPEAARLKKCLPEVETEVSRKRRSSAQEESPAKKKKD 328
EH ++ A L K + +E E+ + SS E +++K+
Sbjct: 924 QREHNSILQLANDD----LHKSIANLEKELEDTKVSSHAEILALQEQKN 968
>11_04_0125 +
13723966-13724011,13724282-13724430,13725100-13725197,
13725321-13725528,13725678-13725695
Length = 172
Score = 33.5 bits (73), Expect = 0.24
Identities = 17/57 (29%), Positives = 27/57 (47%)
Query: 125 GLGFKDKSAAEGTLKVLDGRDPDYQRLAVKGLIGRAKRVLTCTRDETKVSNIKEAIT 181
G G ++ G ++ GR R V+ L+G V TC R E ++S +E +T
Sbjct: 74 GAGRDERWILAGATALVTGRSKGIGRAIVEELVGFGSTVHTCARSEAELSRCQEELT 130
>11_02_0073 -
8020401-8020512,8020594-8020679,8020761-8020921,
8021196-8021400,8021664-8021697,8022352-8022422,
8023363-8023542,8023625-8023765,8023859-8023975,
8024074-8024469
Length = 500
Score = 31.1 bits (67), Expect = 1.3
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 3 KDDKEDTGFGFKDKAKAEDTLRLLEE-HDLNYRRLTVRGLLGRAKRVL 49
K+ KE+ GF F + E R +EE HD ++ T+R L +AK L
Sbjct: 139 KETKENKGFAFVNFTAKEAAQRAIEELHDKEHKGRTLRCSLSQAKHRL 186
>02_02_0471 -
10714440-10714846,10714947-10715034,10715427-10715516,
10715614-10715727
Length = 232
Score = 30.7 bits (66), Expect = 1.7
Identities = 39/163 (23%), Positives = 57/163 (34%), Gaps = 9/163 (5%)
Query: 168 RDETKVSNIKEAITVFEKFLDDFESLHLSKENNPYLSLGVVRAAEQLAGESVTEQQKSFI 227
+D KVS IK+ KF+DD + LS G+ + L V +
Sbjct: 72 KDRAKVSGIKKNSAAVTKFVDDLAKIEFPGAKQ--LSEGIAKVGPALLSGPVFATFEKVS 129
Query: 228 AAYSSVNGEYKRLRTVEESEGGLTWDIVRNNALKPLKATHAEAKLFNEEGEPTPEHLELI 287
+ E K +E+ + + A AT A + EE E E E
Sbjct: 130 TLLPADEEEIK----PKEATAAAAEEEKKEEAAAAAAATDAAGEEKKEEAEEKKEE-EAA 184
Query: 288 LWAYSPEAA--RLKKCLPEVETEVSRKRRSSAQEESPAKKKKD 328
A P AA E E V +A E +PAK +++
Sbjct: 185 APADEPAAAAGESAPAAAEAEPPVEAAATPAAAEAAPAKAEEE 227
>09_03_0179 -
13131404-13131514,13131834-13131920,13132316-13132448,
13133079-13133319,13133423-13133540,13133546-13133731,
13133864-13134049,13134443-13134652,13135171-13135347,
13135823-13135964,13136385-13136927,13137565-13138022
Length = 863
Score = 30.3 bits (65), Expect = 2.2
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 283 HLELILWAYSPEAARLKKCLPEVETEVSRKRRSSAQ--EESPAKKKK 327
HLEL +WA E A LK L + +EV R + A+ E + KKK
Sbjct: 438 HLELDVWAKEREVAGLKASLNTLTSEVQRLYKLCAEWKEAEDSLKKK 484
>05_07_0326 + 29274287-29274428,29274577-29275379
Length = 314
Score = 29.9 bits (64), Expect = 2.9
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 294 EAARLKKCLPEVETEVSRKRRSSAQEESPAKKKK 327
EA KK E E E ++K++ QEE A KKK
Sbjct: 145 EAPNKKKQQQEEEEEAAKKKQQQLQEEEEATKKK 178
Score = 28.3 bits (60), Expect = 9.0
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 294 EAARLKKCLPEVETEVSRKRRSSAQEESPAKKKK 327
EAA+ K+ + E E ++K++ +EE+ AKK K
Sbjct: 159 EAAKKKQQQLQEEEEATKKKQQEEEEEAAAKKTK 192
>10_01_0078 -
1012031-1012084,1012998-1013105,1013610-1013661,
1013926-1016603
Length = 963
Score = 28.7 bits (61), Expect = 6.8
Identities = 20/88 (22%), Positives = 40/88 (45%)
Query: 163 VLTCTRDETKVSNIKEAITVFEKFLDDFESLHLSKENNPYLSLGVVRAAEQLAGESVTEQ 222
V+ C ++ ++ + + IT+ + + S Y +G + +A L GE +
Sbjct: 439 VIKCLCEQNRMDDARALITIMQSRGVRPDMSTNSIMVTAYCKIGEIESALHLFGEMAKDG 498
Query: 223 QKSFIAAYSSVNGEYKRLRTVEESEGGL 250
+ IA Y S+ R+R ++E+E L
Sbjct: 499 IEPSIAVYDSIIVCLCRMRRLKEAEATL 526
>08_01_0087 +
630355-630403,630502-630699,631858-631943,632238-632946,
633029-633194,633459-633934,634023-634873,635078-635987,
636597-636784
Length = 1210
Score = 28.7 bits (61), Expect = 6.8
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 258 NALKPLK-ATHAEAKLFNEEGEPTPEHLELILWAYSPEAARLKKCLPEVETEVSR 311
N LKP H AK F E +PEHLEL + P + + P ++ +V R
Sbjct: 386 NVLKPEPDCKHCGAKRFQES---SPEHLELYFYDDDPTLSHRFRRSPSLDQDVIR 437
>01_05_0300 + 20624757-20625918,20626100-20627118,20627212-20627592
Length = 853
Score = 28.7 bits (61), Expect = 6.8
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 268 AEAKLFNEEGEPTPEHLELILW---AYSPEAARLKKCLPEVETEVSRKRRSSAQEES 321
AE + F E+ E LE W + EA+RL+ L E+E +S + + A E+
Sbjct: 416 AEVEAFTEQLRLKDEKLEAFRWRAASMDAEASRLRSRLQELEARLSEQEQRRAALEA 472
>02_05_1041 -
33713561-33714564,33714844-33714904,33715640-33715951,
33716780-33716917
Length = 504
Score = 28.3 bits (60), Expect = 9.0
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Query: 253 DIVRNNALKPLKATHAEAKLFNEEGEPTPEHLELILWAYSPEAARLKKCLPEVETEVSRK 312
D+ +A+K K + EA G E +L AY E L+ + ++E + R
Sbjct: 404 DVAEGSAVKSKKDSSGEAN-----GHAKKEDRRSLL-AYDDEVKELRSRVEKLEEMMKRN 457
Query: 313 RRSSAQEESPAKKKK 327
R+ A E+ +KK K
Sbjct: 458 RKDKAFYEAASKKLK 472
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.313 0.131 0.367
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,821,989
Number of Sequences: 37544
Number of extensions: 289645
Number of successful extensions: 616
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 610
Number of HSP's gapped (non-prelim): 13
length of query: 328
length of database: 14,793,348
effective HSP length: 82
effective length of query: 246
effective length of database: 11,714,740
effective search space: 2881826040
effective search space used: 2881826040
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 60 (28.3 bits)
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