GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001708-TA|BGIBMGA001708-PA|undefined
         (328 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45286| Best HMM Match : GRIP (HMM E-Value=3.6e-08)                  32   0.56 
SB_31688| Best HMM Match : WD40 (HMM E-Value=3.3e-10)                  29   4.0  
SB_54822| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_35601| Best HMM Match : PKD_channel (HMM E-Value=0)                 29   6.9  
SB_46036| Best HMM Match : PSRT (HMM E-Value=1)                        29   6.9  
SB_45628| Best HMM Match : DUF1639 (HMM E-Value=0.19)                  29   6.9  
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)        29   6.9  

>SB_45286| Best HMM Match : GRIP (HMM E-Value=3.6e-08)
          Length = 800

 Score = 32.3 bits (70), Expect = 0.56
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 2/76 (2%)

Query: 170 ETKVSNIKEAITVFEKF-LDDFESLHLSKENNPYLSLG-VVRAAEQLAGESVTEQQKSFI 227
           ETK+S + E +  +EK    D E +H  KE    L             GE V +     +
Sbjct: 372 ETKLSELSEVVGSYEKLRFHDQEVIHKLKERLQQLDTEKTALTLHSPVGEGVPDNNIQTV 431

Query: 228 AAYSSVNGEYKRLRTV 243
           A   S+  + ++LRTV
Sbjct: 432 AEIDSLRDQVQKLRTV 447


>SB_31688| Best HMM Match : WD40 (HMM E-Value=3.3e-10)
          Length = 841

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 20/118 (16%), Positives = 51/118 (43%), Gaps = 5/118 (4%)

Query: 169 DETKVSNIKEAITVFEKFLDDFESLHLSKENNPYLSLGVVRAAEQLAGESVTEQQKSFIA 228
           ++  ++++ ++++  +   D      L + N+   S     +  ++      +  +S+++
Sbjct: 118 NQPPINHLLQSVSCTQLDSDQVSQYILRQSNSQSQSSSNPSSQSEMLSSQPNQLSESYLS 177

Query: 229 AYSSVNGEYKRLRTVEESEGGLTWDI-----VRNNALKPLKATHAEAKLFNEEGEPTP 281
             S+ N     L +V +S+      +     + +N L+P   T A + L NEE +  P
Sbjct: 178 NQSAPNQSENSLSSVNQSQTASNLSLNQSETIVSNFLEPASTTQASSSLLNEEVDVMP 235


>SB_54822| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1652

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 28/139 (20%), Positives = 52/139 (37%), Gaps = 4/139 (2%)

Query: 189 DFESLHLSKENNPYLSLGVVRAAEQLAGESVTEQQKSFIAAYSSVNGEYKRLRTVEESEG 248
           D E      +N P +    V     +     T+++K  +A++S    E+        S  
Sbjct: 571 DIEGDGNDHKNKPSMKTAAVSDQPHMLSSRGTQRRKPIVASFSEKGSEHTLTNNSRHSYA 630

Query: 249 GLTWDI-VRNNALKPLKATHAEAKLFNEEGEPTPEHLELILWAYSP--EAARLKKCLPEV 305
              + +  R+   + +K+T  E +   E G  TP+  E      +   E + L  C P+V
Sbjct: 631 SSNYTLKARSRRRRNMKST-GEEETKEEPGLVTPKAYEAFKRLLNDCFEQSELLACDPDV 689

Query: 306 ETEVSRKRRSSAQEESPAK 324
            +  + K     +  S  K
Sbjct: 690 TSSANVKENGYFKCSSDVK 708


>SB_35601| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 2497

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 4/80 (5%)

Query: 142 DGRDPDYQRLAVKGLIGRAKRVLTCTRDETKVSNIKEAITVFEKFLDDFESLHLSKEN-N 200
           D +DPD    A K L+     +L    DE KV    EA    +K   + +   L  +N  
Sbjct: 848 DDQDPDEMEKAAKNLLHGTGNILAAASDEAKVYG-TEASKTTDKTKQESKERALQADNLI 906

Query: 201 PYLSLGVVRAAEQLAGESVT 220
             LS  V+   E  AGES T
Sbjct: 907 ARLSRSVLGRKE--AGESPT 924


>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
          Length = 878

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 296 ARLKKCLPEVETE-VSRKRRSSAQEESPAKKKK 327
           +R K+  P  E E  SR+  SS+ E+SP KKK+
Sbjct: 82  SRKKRRSPSSEDEPASRRHASSSPEDSPPKKKR 114


>SB_45628| Best HMM Match : DUF1639 (HMM E-Value=0.19)
          Length = 662

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 7/95 (7%)

Query: 184 EKFLDDFESLHLSK--ENNPYLSLGVVRAAEQLAGESVTEQQKSFIAAYSSVNGEYKRLR 241
           E+  DD  +L++ +  E     +LGV   AEQ   E+ +E ++     YS++ G   + +
Sbjct: 519 ERISDDEFALYVKRASEEETLTALGVQAIAEQYNSETDSETEEEIPIQYSAITGRDPK-K 577

Query: 242 TVEESEGGLTWDIVRNNALKPLKATHAEA-KLFNE 275
             +E E  + W + R  A + +K     A KL +E
Sbjct: 578 AYKERERNI-WIMYR--AYRGMKKAKRRAQKLMDE 609


>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
          Length = 3107

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 10/145 (6%)

Query: 177 KEAITVFEKFLDDFESLHLSKENNPYLSLGVVRAAEQLAGESVTEQQKSFIAAYSSVNGE 236
           +E ++   + LD  E+++ + EN    +L       Q+  E  T+Q+ +     S  NG+
Sbjct: 598 REELSAKNQQLDKLENVNKALENRVD-ALKQEYTKTQVTTEVSTKQKDALERELSEANGK 656

Query: 237 YKRLRTVEESEGGLTWDIVRNNALKPLKATHAEAKLFNEEGEPTPEHLELILWAYSPEAA 296
            + L    E+  G+  ++ +  A   LK    E  L ++  E T E              
Sbjct: 657 NRELEEACENLAGIRDELEKELAGSKLKIQSLENSL-DKANEKTSE--------AEHNNG 707

Query: 297 RLKKCLPEVETEVSRKRRSSAQEES 321
           RL+K + E+E  +   R    Q E+
Sbjct: 708 RLRKTISELENNLYALRNKHVQMEN 732


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.313    0.131    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,961,940
Number of Sequences: 59808
Number of extensions: 340594
Number of successful extensions: 766
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 763
Number of HSP's gapped (non-prelim): 10
length of query: 328
length of database: 16,821,457
effective HSP length: 82
effective length of query: 246
effective length of database: 11,917,201
effective search space: 2931631446
effective search space used: 2931631446
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 60 (28.3 bits)