GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001708-TA|BGIBMGA001708-PA|undefined
         (328 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81056-3|CAB02910.1|  718|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr...    31   1.5  
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p...    31   1.5  
Z73426-4|CAA97793.3| 1593|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AF025458-3|AAB70976.1|  612|Caenorhabditis elegans Hypothetical ...    29   3.4  
AF036706-3|ABD94091.1|  204|Caenorhabditis elegans Hypothetical ...    29   4.5  
AF016685-15|AAG24139.2|  321|Caenorhabditis elegans Hypothetical...    29   6.0  
Z81539-4|CAB04392.2|  208|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z49132-3|CAA88988.1|  397|Caenorhabditis elegans Hypothetical pr...    28   7.9  
AF100656-11|AAF99960.1|  115|Caenorhabditis elegans Hypothetical...    28   7.9  
AF099924-2|AAC68811.1|  189|Caenorhabditis elegans Hypothetical ...    28   7.9  

>Z81056-3|CAB02910.1|  718|Caenorhabditis elegans Hypothetical
           protein F09F3.5 protein.
          Length = 718

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 29/127 (22%), Positives = 49/127 (38%), Gaps = 1/127 (0%)

Query: 175 NIKEAITVFEKFLDDFESLHLSKENNPYLSLGVVRAAEQLAGE-SVTEQQKSFIAAYSSV 233
           N+K  I +F        +  +++E    +   V+RA +  A E S +EQ    I      
Sbjct: 2   NLKPTILLFTILFLKCATFEVNEETERIVEDAVMRALDSRASENSESEQTSQHIIVSQQA 61

Query: 234 NGEYKRLRTVEESEGGLTWDIVRNNALKPLKATHAEAKLFNEEGEPTPEHLELILWAYSP 293
           N + K  +   E     T  +VR   L+ L A +   + +  E E   +  E       P
Sbjct: 62  NSDSKSAQFTGEVLEEATRILVREFGLEILPAANEVIERWRNEEEELLQSSETTTTTEHP 121

Query: 294 EAARLKK 300
           +  R K+
Sbjct: 122 DPTRSKR 128


>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical
           protein C26C6.1a protein.
          Length = 1883

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 15/51 (29%), Positives = 28/51 (54%)

Query: 278 EPTPEHLELILWAYSPEAARLKKCLPEVETEVSRKRRSSAQEESPAKKKKD 328
           EP P  L  +    +P  AR+K  +P+ ++E SR    + + +SP K +++
Sbjct: 456 EPAPAQLTPVKPKATPHRARIKIEMPDTDSEDSRTPPPTHKRKSPKKPREN 506


>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
           protein C26C6.1a protein.
          Length = 1883

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 15/51 (29%), Positives = 28/51 (54%)

Query: 278 EPTPEHLELILWAYSPEAARLKKCLPEVETEVSRKRRSSAQEESPAKKKKD 328
           EP P  L  +    +P  AR+K  +P+ ++E SR    + + +SP K +++
Sbjct: 456 EPAPAQLTPVKPKATPHRARIKIEMPDTDSEDSRTPPPTHKRKSPKKPREN 506


>Z73426-4|CAA97793.3| 1593|Caenorhabditis elegans Hypothetical protein
            F40F11.2 protein.
          Length = 1593

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 13/18 (72%), Positives = 16/18 (88%)

Query: 310  SRKRRSSAQEESPAKKKK 327
            SRKRRS+  E+SPA+KKK
Sbjct: 1198 SRKRRSAKIEDSPAQKKK 1215


>AF025458-3|AAB70976.1|  612|Caenorhabditis elegans Hypothetical
           protein C01B12.3 protein.
          Length = 612

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 279 PTP--EHLELILWAYSPEAARLKKCLPEVETEVSRKRRSSAQEESPAKKK 326
           PTP  +H++L L   S ++    + LP ++ E   KR+S+   ESP   K
Sbjct: 531 PTPITDHIDLPLHVASSQSW-FNESLPVIKEEEEAKRKSNTDTESPKSSK 579


>AF036706-3|ABD94091.1|  204|Caenorhabditis elegans Hypothetical
           protein T07A9.14 protein.
          Length = 204

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 17/49 (34%), Positives = 24/49 (48%)

Query: 278 EPTPEHLELILWAYSPEAARLKKCLPEVETEVSRKRRSSAQEESPAKKK 326
           EPT + +E     Y    +   K   EV+TE +R+RR     E+ A KK
Sbjct: 103 EPTADEIEAKEEEYKKNKSEYYKRRNEVKTEEARERRRVRDSETDAWKK 151


>AF016685-15|AAG24139.2|  321|Caenorhabditis elegans Hypothetical
           protein F59E11.2 protein.
          Length = 321

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 6/62 (9%)

Query: 174 SNIKEAITVFEKFLDDFESLHLSKENNPYLSLGVVRAAEQLAGESVTEQQKSFIAAYSSV 233
           SN+ E   +FEK  +D E       NN Y SLG    A ++ G++  +Q  SF   +  +
Sbjct: 76  SNMTEVKFLFEKIKEDEEGKLDILVNNVYNSLG---KATEMIGKTFFDQDPSF---WDDI 129

Query: 234 NG 235
           NG
Sbjct: 130 NG 131


>Z81539-4|CAB04392.2|  208|Caenorhabditis elegans Hypothetical
           protein F46A8.6 protein.
          Length = 208

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 13/36 (36%), Positives = 23/36 (63%)

Query: 292 SPEAARLKKCLPEVETEVSRKRRSSAQEESPAKKKK 327
           S E A+ KK   +   +VS+K++ S++ +  A+KKK
Sbjct: 75  SKEPAKKKKKSADSSQKVSKKKKKSSKSKKSAEKKK 110


>Z49132-3|CAA88988.1|  397|Caenorhabditis elegans Hypothetical
           protein ZK666.3 protein.
          Length = 397

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 154 KGLIGRAKRVLTCTRDETKVSNIKEAITVF-EKFLDDFESLHLSKENNPYLSLGV 207
           +GL+  A+RVL   R  T   N+K+ I  F   F D+F +L+  + +    S G+
Sbjct: 132 EGLLA-AQRVLNSGRQRTNRYNVKQVILAFAADFQDEFSNLNAIELSRDLQSNGI 185


>AF100656-11|AAF99960.1|  115|Caenorhabditis elegans Hypothetical
           protein F49F1.12 protein.
          Length = 115

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 13/36 (36%), Positives = 23/36 (63%)

Query: 292 SPEAARLKKCLPEVETEVSRKRRSSAQEESPAKKKK 327
           S E A+ KK   +   +VS+K++ S++ +  A+KKK
Sbjct: 12  SKEPAKKKKKSADSSQKVSKKKKKSSKSKKSAEKKK 47


>AF099924-2|AAC68811.1|  189|Caenorhabditis elegans Hypothetical
          protein K07A9.3 protein.
          Length = 189

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 2  GKDDKEDTGF-GFKDKAKAEDTLRLLEEHDLNYRRLTVRGLLGR 44
          G DD   T F    DKAK   +++ +  HD+N+R   ++ L G+
Sbjct: 23 GLDDFGRTDFLRIYDKAKKNKSIKSITRHDVNFRAYILQVLHGK 66


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.313    0.131    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,616,765
Number of Sequences: 27539
Number of extensions: 247241
Number of successful extensions: 615
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 608
Number of HSP's gapped (non-prelim): 12
length of query: 328
length of database: 12,573,161
effective HSP length: 82
effective length of query: 246
effective length of database: 10,314,963
effective search space: 2537480898
effective search space used: 2537480898
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 60 (28.3 bits)