GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001707-TA|BGIBMGA001707-PA|IPR002453|Beta tubulin,
IPR000217|Tubulin, IPR013838|Beta tubulin, autoregulation binding
site, IPR003008|Tubulin/FtsZ, GTPase, IPR008280|Tubulin/FtsZ,
C-terminal
         (409 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   6.2  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   6.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   6.2  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   8.2  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.6 bits (46), Expect = 6.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 290 LAVQDKNSSYFVEWIPNNVKVAVCD 314
           LA+   NS +F E+  NN+++ V D
Sbjct: 328 LAIGCWNSEHFFEYGGNNIEIIVKD 352


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.6 bits (46), Expect = 6.2
 Identities = 6/20 (30%), Positives = 14/20 (70%)

Query: 72  VESVLDVVRKEAEGCDCLQG 91
           ++S+++++R   + CD L G
Sbjct: 106 IDSIINIIRVRVDACDRLWG 125


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 6.2
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 262  CDPRHGRYLTVAAIFR--GRMSMKEVDEQMLAVQDKN 296
            C      Y T+  I +  G M+ K+V+  ML+++D+N
Sbjct: 1075 CTMAEDVYQTLKHIIQTHGEMTDKQVEAYMLSLRDEN 1111


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.2 bits (45), Expect = 8.2
 Identities = 7/22 (31%), Positives = 13/22 (59%)

Query: 26  DEHGIDTTGHYHGESDLQLERI 47
           D HG+   GH+ G+ D+  + +
Sbjct: 110 DVHGVIGAGHWIGDHDVDKDEL 131


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.135    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,227
Number of Sequences: 429
Number of extensions: 4258
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 4
length of query: 409
length of database: 140,377
effective HSP length: 59
effective length of query: 350
effective length of database: 115,066
effective search space: 40273100
effective search space used: 40273100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)