GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001705-TA|BGIBMGA001705-PA|undefined
         (300 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    24   1.6  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        22   4.8  
DQ855503-1|ABH88190.1|  124|Tribolium castaneum chemosensory pro...    22   6.4  
AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory recept...    21   8.5  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    21   8.5  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 7/64 (10%)

Query: 114 GVLHVCYAPEMETVNELKEKLIERRKDV-------FYRLHKNEKDLSFSKKTVVNEIDDV 166
           G+   C  PE++   + KEK  ++ KD           + K E +LS S+KT+ N    +
Sbjct: 252 GMRPECVVPEVQCAVKRKEKKAQKEKDKPNSTTNGSPDVIKVEPELSDSEKTLCNGSKGI 311

Query: 167 TQEK 170
           + E+
Sbjct: 312 SPEQ 315


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 130 LKEKLIERRKDVFYRLHKNEKDLSFSKKTVVNEIDDVTQEKVAEKAKLNMGNFNLIHSNK 189
           LK K  +RR    +  H+ ++     ++T   +I   T+E++A++ KL      +  SN+
Sbjct: 216 LKRK--QRRSRTTFTAHQLDELEKAFERTQYPDI--YTREELAQRTKLTEARIQVWFSNR 271

Query: 190 R 190
           R
Sbjct: 272 R 272


>DQ855503-1|ABH88190.1|  124|Tribolium castaneum chemosensory
           protein 17 protein.
          Length = 124

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 1/27 (3%)

Query: 83  EIFTEAYHIQYEKI-QSARIAKKYLDC 108
           E +T   +I  ++I ++ R+ K YLDC
Sbjct: 19  EEYTVPQNIDIDEILKNDRLTKNYLDC 45


>AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory receptor
           candidate 52 protein.
          Length = 360

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 249 TDIDIVDCTSTERETITNINEALNYNKFGNEI 280
           T+I + D    E +TI  I+ +L   K G+EI
Sbjct: 274 TNIFLCDEICNEGQTILGISYSLEKLKTGDEI 305


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 249 TDIDIVDCTSTERETITNINEALNYNKFGNEI 280
           T+I + D    E +TI  I+ +L   K G+EI
Sbjct: 274 TNIFLCDEICNEGQTILGISYSLEKLKTGDEI 305


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.131    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,478
Number of Sequences: 317
Number of extensions: 3251
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 5
length of query: 300
length of database: 114,650
effective HSP length: 56
effective length of query: 244
effective length of database: 96,898
effective search space: 23643112
effective search space used: 23643112
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 43 (21.4 bits)