Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001705-TA|BGIBMGA001705-PA|undefined
(300 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g27790.1 68415.m03369 expressed protein 97 1e-20
At5g27300.1 68418.m03260 pentatricopeptide (PPR) repeat-containi... 69 5e-12
At5g41810.2 68418.m05091 expressed protein 35 0.058
At1g26500.1 68414.m03230 pentatricopeptide (PPR) repeat-containi... 34 0.13
At3g46730.1 68416.m05073 disease resistance protein (CC-NBS clas... 33 0.23
At2g25320.1 68415.m03029 meprin and TRAF homology domain-contain... 32 0.41
At5g48600.1 68418.m06011 structural maintenance of chromosomes (... 31 0.94
At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil... 31 0.94
At3g44690.1 68416.m04806 expressed protein 31 0.94
At2g03520.1 68415.m00312 expressed protein similar to SP|Q41706 ... 31 0.94
At5g27330.1 68418.m03263 expressed protein 31 1.2
At3g28770.1 68416.m03591 expressed protein 31 1.2
At4g14560.1 68417.m02242 auxin-responsive protein / indoleacetic... 30 1.6
At2g11570.1 68415.m01245 hypothetical protein 30 2.2
At1g73430.1 68414.m08500 sec34-like family protein contains Pfam... 30 2.2
At1g13220.2 68414.m01534 nuclear matrix constituent protein-rela... 29 2.9
At5g60030.1 68418.m07527 expressed protein 29 3.8
At5g48520.1 68418.m05999 expressed protein similar to unknown pr... 29 3.8
At3g22910.1 68416.m02887 calcium-transporting ATPase, plasma mem... 29 3.8
At1g12150.1 68414.m01407 expressed protein contains Pfam profile... 29 3.8
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 29 5.0
At3g57290.1 68416.m06377 eukaryotic translation initiation facto... 29 5.0
At3g49400.1 68416.m05400 transducin family protein / WD-40 repea... 29 5.0
At5g57120.1 68418.m07132 expressed protein weak similarity to SP... 28 6.6
At5g41810.1 68418.m05090 expressed protein 28 6.6
At3g02930.1 68416.m00288 expressed protein ; expression support... 28 6.6
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu... 28 6.6
At1g53020.1 68414.m06002 ubiquitin-conjugating enzyme family pro... 28 6.6
At5g65930.2 68418.m08300 kinesin-like calmodulin-binding protein... 28 8.8
At5g65930.1 68418.m08299 kinesin-like calmodulin-binding protein... 28 8.8
At5g40450.1 68418.m04905 expressed protein 28 8.8
At3g18100.2 68416.m02302 myb family transcription factor (MYB4R1... 28 8.8
At3g18100.1 68416.m02301 myb family transcription factor (MYB4R1... 28 8.8
At3g05270.1 68416.m00575 expressed protein similar to endosome-a... 28 8.8
At1g27640.1 68414.m03377 expressed protein 28 8.8
>At2g27790.1 68415.m03369 expressed protein
Length = 240
Score = 97.1 bits (231), Expect = 1e-20
Identities = 69/225 (30%), Positives = 120/225 (53%), Gaps = 14/225 (6%)
Query: 34 AVKVYTVNNESTHLLVFGVPSINLRQETKSLVQRYGAIKKFNLTKEYECEIFTEAYHIQY 93
AV+VYTV +ES +++V VP++ + L YG +++ +C FT+ Y I++
Sbjct: 10 AVRVYTVCDESRYMIVRNVPALGCGDDLMRLFMTYGEVEECKPMDAEDCAEFTDVYWIKF 69
Query: 94 EKIQSARIAKKYLDCKNYYGGVLHVCYAPEMETVNELKEKLIERRKDVFYRLH-KNEKDL 152
I +AR AK+ LD ++ G L + YAPE E VN+ K+KL RRK+V RL+ + EK
Sbjct: 70 RLITNARFAKRKLDESSFLGNRLQISYAPEYENVNDTKDKLESRRKEVLARLNPQKEKST 129
Query: 153 SFSKK---TVVNEIDDVTQEKVAEKAKLNMGNFNLIH-SNKRKTNNSNLVNKRLRNSHHL 208
S K + + D+V+ ++ + + + GN + S+ ++ S+ +N+ ++
Sbjct: 130 SQVTKLAGPALTQTDNVSSQRREMEYQFHRGNAPVTRVSSDQEYFASSSMNQTVK----- 184
Query: 209 TDCKKINAKIDVLENNVTIQKSPKIELKHKDNVELQKRLKTDIDI 253
T +K+N KI+ N +Q S + + + N QKRL+ I
Sbjct: 185 TVREKLN-KIEESGNQKRLQPSSQTQPEESGN---QKRLQPSSQI 225
>At5g27300.1 68418.m03260 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587; contains Pfam profile PF01535: PPR
repeat
Length = 510
Score = 68.5 bits (160), Expect = 5e-12
Identities = 37/109 (33%), Positives = 62/109 (56%), Gaps = 4/109 (3%)
Query: 39 TVNNESTHLLVFGVPSINLRQETKSLVQRYGAIKKFNLTKEYECEIFTEAYHIQYEKIQS 98
+V +ES +++V VP++ + L YG +++ +C FT+ Y I++ I +
Sbjct: 371 SVCDESRYMIVRNVPALGCGDDLMRLFMTYGEVEECKPMDAEDCAEFTDVYWIKFRLITN 430
Query: 99 ARIAKKYLDCKNYYGGVLHVCYAPEMETVNELKEKLIERRKDVFYRLHK 147
AR LD ++ G L + YAPE E+V++ KEKL RRK+V RL++
Sbjct: 431 AR----KLDESSFLGNRLQISYAPEYESVSDTKEKLETRRKEVLARLNR 475
>At5g41810.2 68418.m05091 expressed protein
Length = 279
Score = 35.1 bits (77), Expect = 0.058
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 163 IDDVTQEKVAEKAKLNMGNFNLIHSNKRKTNNSNLVN-KRLRNSHHLTDC 211
ID + + K KL + N K++TNN+NL N K + S H+ DC
Sbjct: 67 IDSPSSSSLEMKKKLEIENTKKEEEKKKETNNNNLSNMKHKKTSSHVWDC 116
>At1g26500.1 68414.m03230 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 505
Score = 33.9 bits (74), Expect = 0.13
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 10/96 (10%)
Query: 87 EAYHIQYEKIQSARIAKKYLDCKNYYGGVLHVCYAPEMETVNE-----LKEKLIERRKDV 141
+ + I + + SAR KK C NY+ + Y +ET+N KEKL+E K V
Sbjct: 147 KTFRIVLKTLASARELKK---CVNYFHLMNGFGYLYNVETMNRGVETLCKEKLVEEAKFV 203
Query: 142 FYRLHKNEKDLSFSKKTVVNEIDDVTQEKVAEKAKL 177
F +L + K + +T++ DV + E AKL
Sbjct: 204 FIKLKEFIKPDEITYRTMIQGFCDVGD--LIEAAKL 237
>At3g46730.1 68416.m05073 disease resistance protein (CC-NBS class),
putative domain signature CC-NBS exists, suggestive of a
disease resistance protein.
Length = 847
Score = 33.1 bits (72), Expect = 0.23
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 84 IFTEAYHIQYEKIQSARIAKKYL--DCKNYYGGVLHVCYAPEMETVNELKEKLIERRKDV 141
+F E Y I+ EK+ +A+ ++ D + V CY E+ + +K + IER K +
Sbjct: 426 VFPEDYEIKVEKLIHLLVAEGFIQEDEEMMMEDVAR-CYIDELVDRSLVKAERIERGKVM 484
Query: 142 FYRLHKNEKDLSFSKKTVVNEIDDVTQEK 170
R+H +DL+ K +N + +V EK
Sbjct: 485 SCRIHDLLRDLAIKKAKELNFV-NVYNEK 512
>At2g25320.1 68415.m03029 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 1663
Score = 32.3 bits (70), Expect = 0.41
Identities = 34/153 (22%), Positives = 61/153 (39%), Gaps = 4/153 (2%)
Query: 55 INLRQETKSLVQRYGAIKKFNLTKEYECEIFTEAYHIQYEKIQSARIAKKYLDCKNYYGG 114
+ L++E K +Q K K E E + K ++ R +++ D +
Sbjct: 1357 VRLKEEKKIEIQSMTKEKSSITQKLSESEAANTRLKSEM-KAEADRFSREKKDLVEQFRD 1415
Query: 115 VLHVCYAPEMETVNELKEKLIERRKDVFYRLHKNEKDLSFSKKTVVNEIDDVTQEK--VA 172
V E +E+ +KL +K + RLH+ E L+ K +E+ V +EK +
Sbjct: 1416 VESQLEWIRSERQDEI-DKLSSEKKTLLDRLHEAETQLALQKTRKRDELKKVGKEKNALT 1474
Query: 173 EKAKLNMGNFNLIHSNKRKTNNSNLVNKRLRNS 205
EK K+ ++ N+ + LR S
Sbjct: 1475 EKLKVTEAARKRFEEELKRYATENVTREELRKS 1507
>At5g48600.1 68418.m06011 structural maintenance of chromosomes
(SMC) family protein similar to SP|P50532 Chromosome
assembly protein XCAP-C {Xenopus laevis}; contains Pfam
profiles PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1241
Score = 31.1 bits (67), Expect = 0.94
Identities = 43/182 (23%), Positives = 72/182 (39%), Gaps = 11/182 (6%)
Query: 123 EMETVNELKEKLIERRKDVFYRLHKNEKDLSFSKKTVVNEIDDVTQEKVAEKAKLNMGNF 182
E E + L KL E + L EK L K E + E +A+L
Sbjct: 373 ESEDSSNLIPKLQENIPKLQKVLLDEEKKLEEIKAIAKVETEGYRSELTKIRAELEPWEK 432
Query: 183 NLI-HSNKRK--TNNSNLVNKRLRNS-HHLTDCKKINAKIDVLENN---VTIQKSPKIEL 235
+LI H K ++ S L++K+ + TD +K + I + T I+
Sbjct: 433 DLIVHRGKLDVASSESELLSKKHEAALKAFTDAQKQLSDISTRKKEKAAATTSWKADIKK 492
Query: 236 KHKDNVELQK----RLKTDIDIVDCTSTERETITNINEALNYNKFGNEIIRNIVNKPPNK 291
K ++ +E +K LK +V RE + + A+N K NE+++ ++ N
Sbjct: 493 KKQEAIEARKVEEESLKEQETLVPQEQAAREKVAELKSAMNSEKSQNEVLKAVLRAKENN 552
Query: 292 II 293
I
Sbjct: 553 QI 554
>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to chromatin
remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
GI:6478518; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00628: PHD-finger, PF00385: 'chromo'
(CHRromatin Organization MOdifier)
Length = 2228
Score = 31.1 bits (67), Expect = 0.94
Identities = 22/92 (23%), Positives = 37/92 (40%)
Query: 120 YAPEMETVNELKEKLIERRKDVFYRLHKNEKDLSFSKKTVVNEIDDVTQEKVAEKAKLNM 179
Y P + E KL ER+K++ R + E+ L V E+ + +E +
Sbjct: 1375 YTPAGRALKEKFTKLRERQKNLIARRNSVEESLPSGNVDQVTEVANQDEESPTSMDLDDS 1434
Query: 180 GNFNLIHSNKRKTNNSNLVNKRLRNSHHLTDC 211
+ KRK ++S+ L HH +C
Sbjct: 1435 KASQQCDAQKRKASSSDPKPDLLSQHHHGAEC 1466
>At3g44690.1 68416.m04806 expressed protein
Length = 1176
Score = 31.1 bits (67), Expect = 0.94
Identities = 39/179 (21%), Positives = 75/179 (41%), Gaps = 17/179 (9%)
Query: 56 NLRQETKSLVQRYGAIKKFNLTKEYECEIFTEAYHIQYEKIQSARIAKKYLDCKNYYGGV 115
N+ +E +QR G++ K ++ ++ H+++ + + R+A Y K Y V
Sbjct: 306 NVARENDLFMQRRGSLSKSHVCGSNIADVDAADTHLEFSRKE--RMADHYESVKEDYPFV 363
Query: 116 L------------HVCYAPEMETVNELKEKLIERRKDVFYRLHKNEKDLSFSKKTVVNEI 163
+ + E V L K RKD Y ++K+L FS+ V +
Sbjct: 364 ELGSRVVDERDDHYRNFRNEERKVVYLDNKCQVLRKDYLYDGVDSKKNLDFSEPYAVVDR 423
Query: 164 DDVTQEKVAEKAKLNMGNFNLIHSNKRKTNNSNLVNKRLRNSHHLTDCKKINAKIDVLE 222
DD + + LN + N+R S+ + LRN +H + +I++ +D+ +
Sbjct: 424 DDKASQSITR--CLNKEREAYL-DNERNAVFSDDKRQELRNEYHPGNDGRIHSDVDMAD 479
>At2g03520.1 68415.m00312 expressed protein similar to SP|Q41706 A3
protein (unknown function) {Vigna unguiculata}
Length = 388
Score = 31.1 bits (67), Expect = 0.94
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 129 ELKEKLIERRKDVFYRLHKNEKDLSFSKKTVVNEIDDVTQEKVAEKAKLNMGNFNLIHSN 188
++KEKL + Y +N +D K + + D +QEK+AEKAK F + N
Sbjct: 154 DVKEKLKSLPSEDLYSSIENGED-----KPEIEKTDVESQEKLAEKAKAGTAGFYVELEN 208
Query: 189 KR 190
KR
Sbjct: 209 KR 210
>At5g27330.1 68418.m03263 expressed protein
Length = 628
Score = 30.7 bits (66), Expect = 1.2
Identities = 32/148 (21%), Positives = 72/148 (48%), Gaps = 13/148 (8%)
Query: 123 EMETVNELKEKLIERRKDVFYRLHKNEKDLSFSKKTVVN-EIDDVTQEKVAEKAKLNMGN 181
++E+ E ++ + R V ++++ K++VV E+ +V+ + E +L N
Sbjct: 159 KLESEREEFSRVCDERDLVKSGFDLQSEEMNLLKESVVRLEMREVSLGE--EVGRLKCEN 216
Query: 182 FNLIHSNKRKTNNSNLVNKRLRNSHHLTDCKKINAK-IDVLENNV--TIQKSPKIELKHK 238
L+ K++ ++ + R L + + + IDVL+ + +++ ++E+ +
Sbjct: 217 GRLVKERKKR---EEVIERGNRERSELVESLEEKVREIDVLKREIEGVVKEKMEVEMVRR 273
Query: 239 DN----VELQKRLKTDIDIVDCTSTERE 262
D VEL+K+L +IV+ + ERE
Sbjct: 274 DQREMIVELEKKLGDMNEIVESLTKERE 301
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 30.7 bits (66), Expect = 1.2
Identities = 35/149 (23%), Positives = 56/149 (37%), Gaps = 5/149 (3%)
Query: 97 QSARIAKKYLDCKNYYGGVLHVCYAPEMETVNELKEKLIERRKDVFYRLHKNEKDLSFSK 156
+++ + KK D K Y L + ET KL E KD K E + S SK
Sbjct: 952 KNSNMKKKEEDKKEYVNNELKKQEDNKKETTKSENSKLKEENKD---NKEKKESEDSASK 1008
Query: 157 KTVVNEIDDVTQEKVAEKAKLNMGNFNLIHSNKRKTNNSNLVNKRLRNSHHLTDCKKINA 216
E ++ + K E+AK + + K + K S L KK
Sbjct: 1009 NREKKEYEE-KKSKTKEEAKKEKKK-SQDKKREEKDSEERKSKKEKEESRDLKAKKKEEE 1066
Query: 217 KIDVLENNVTIQKSPKIELKHKDNVELQK 245
+ E+ K + + +H+DN ++K
Sbjct: 1067 TKEKKESENHKSKKKEDKKEHEDNKSMKK 1095
>At4g14560.1 68417.m02242 auxin-responsive protein / indoleacetic
acid-induced protein 1 (IAA1) identical to SP|P49677
Auxin-responsive protein IAA1 (Indoleacetic acid-induced
protein 1) {Arabidopsis thaliana}
Length = 168
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/74 (25%), Positives = 33/74 (44%)
Query: 124 METVNELKEKLIERRKDVFYRLHKNEKDLSFSKKTVVNEIDDVTQEKVAEKAKLNMGNFN 183
ME N L K E R + + + +LS + + +D T+E AK + +
Sbjct: 1 MEVTNGLNLKDTELRLGLPGAQEEQQLELSCVRSNNKRKNNDSTEESAPPPAKTQIVGWP 60
Query: 184 LIHSNKRKTNNSNL 197
+ SN++ NN N+
Sbjct: 61 PVRSNRKNNNNKNV 74
>At2g11570.1 68415.m01245 hypothetical protein
Length = 305
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 130 LKEKLIERRKDVFYRLHKNEKDLSFSKKTVVNEIDDVTQEKVAEKAKLNMGNF 182
+K + + +DV+ RL K E+D SK + ++ T EK K G+F
Sbjct: 29 VKTAVADAMQDVYLRLDKLERDAETSKTKEKDREEEATGEKTDGKTGFGGGDF 81
>At1g73430.1 68414.m08500 sec34-like family protein contains Pfam
PF04136: Sec34-like family profile; similar to Conserved
oligomeric Golgi complex component 3 (Vesicle docking
protein SEC34 homolog) (p94) (Swiss-Prot:Q96JB2) [Homo
sapiens]
Length = 784
Score = 29.9 bits (64), Expect = 2.2
Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 5/114 (4%)
Query: 135 IERRKDVFYRLHKNEKDLSFSKKTVVNEIDDVTQEK--VAEKAKLNMGNFNLIHSNKRKT 192
++ D+F L + ++ KT+ + D + EK + E A+ N + +
Sbjct: 134 VDETLDLFNELQLQHQGVTTKTKTLHDACDRLLMEKQKLMEFAEALRSKLNYFDELENVS 193
Query: 193 NNSNLVNKRLRNSHHLTDCKKINAKIDVLENNVTIQKSPKIELKHKDNVELQKR 246
+N N + NS+ L K+++ I +E+N +S LK + +LQ R
Sbjct: 194 SNFYSPNMNVSNSNFLPLLKRLDECISYIEDNPQYAESSVYLLKFR---QLQSR 244
>At1g13220.2 68414.m01534 nuclear matrix constituent protein-related
similar to nuclear matrix constituent protein 1 (NMCP1)
[Daucus carota] GI:2190187
Length = 1128
Score = 29.5 bits (63), Expect = 2.9
Identities = 35/135 (25%), Positives = 65/135 (48%), Gaps = 13/135 (9%)
Query: 125 ETVNELKEKLIERRKDVFYRLHKNEKDLSFSKKT---VVNEIDDV-TQEKVAEKAKLNMG 180
E VNE+++KL + K++ K + +S SK+T + ++++ T+EK A ++ +
Sbjct: 291 EKVNEIEKKLKLKEKELEEWNRKVDLSMSKSKETEEDITKRLEELTTKEKEAHTLQITL- 349
Query: 181 NFNLIHSNKRKTNNSNLVNKRLRNSHHLTDCKKINAKIDVLENNV---TIQKSPKIELKH 237
L N+ + L+ + L D +K +LE + I+KS EL+
Sbjct: 350 ---LAKENELRAFEEKLIAREGTEIQKLIDDQKEVLGSKMLEFELECEEIRKSLDKELQR 406
Query: 238 KDNVELQKRLKTDID 252
K +E +R K +ID
Sbjct: 407 K--IEELERQKVEID 419
>At5g60030.1 68418.m07527 expressed protein
Length = 292
Score = 29.1 bits (62), Expect = 3.8
Identities = 34/139 (24%), Positives = 66/139 (47%), Gaps = 12/139 (8%)
Query: 123 EMETVNE-LKEKLIERRKDVFYRLHKNEKDLSFSKKTVVNEIDDVTQEKVAEKAKLNMGN 181
+ + V+E + EKL ++ R K EK KK N+ +DV EKV EK + +
Sbjct: 125 DADVVDEKVNEKLEAEQRSEERRERKKEK-----KKKKNNKDEDVVDEKVKEKLEDEQKS 179
Query: 182 FNLIHSNKRKT---NNSNLVNKRLRNSHHLTDCKKINAKIDVLENNVTIQKSPKIELKHK 238
+ K+K+ N+ ++V+++ + + K + E+ V ++ K+E + +
Sbjct: 180 ADRKERKKKKSKKNNDEDVVDEKEKLEDEQKSAEIKEKKKNKDEDVVDEKEKEKLEDEQR 239
Query: 239 D---NVELQKRLKTDIDIV 254
E +K+ K+D +IV
Sbjct: 240 SGERKKEKKKKRKSDEEIV 258
>At5g48520.1 68418.m05999 expressed protein similar to unknown
protein (gb|AAB97010.1)
Length = 671
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 208 LTDCKKINAKIDVLENNVTIQKSPKIEL--KHKDNVELQKRLKTD 250
L + KIN+K+ VT++ K E+ H +VELQ+R+ D
Sbjct: 600 LDEMGKINSKLSTAVEEVTLEHRNKREIVKHHAKDVELQRRVFVD 644
>At3g22910.1 68416.m02887 calcium-transporting ATPase, plasma
membrane-type, putative / Ca(2+)-ATPase, putative
(ACA13) identical to SP|Q9LIK7 Potential
calcium-transporting ATPase 13, plasma membrane-type (EC
3.6.3.8) (Ca(2+)-ATPase isoform 13) {Arabidopsis
thaliana}; similar to SP|Q9LF79 Calcium-transporting
ATPase 8, plasma membrane-type (EC 3.6.3.8)
(Ca2+-ATPase, isoform 8) {Arabidopsis thaliana};
contains InterPro Accession IPR006069: Cation
transporting ATPase
Length = 1017
Score = 29.1 bits (62), Expect = 3.8
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 125 ETVNELKEKLIERRKDVFYRLHKNEKDLSFSKKTVVNEIDDVT-QEKVAEKAKLNMGNFN 183
+ NE + +E+ K+VF LHKN + TVV ++ V ++ A+ +LN+G +
Sbjct: 923 QVFNEFNARSLEK-KNVFKGLHKNRLFIGIIVVTVVLQVVMVEFLKRFADTERLNLGQWG 981
Query: 184 L 184
+
Sbjct: 982 V 982
>At1g12150.1 68414.m01407 expressed protein contains Pfam profile
PF05701: Plant protein of unknown function (DUF827);
expression supported by MPSS
Length = 548
Score = 29.1 bits (62), Expect = 3.8
Identities = 29/144 (20%), Positives = 60/144 (41%), Gaps = 4/144 (2%)
Query: 123 EMETVNELKEKLIERRKDVFYRLHKNEKDLSFSKKTVVNEIDDVTQEKVAEKAKLNMGNF 182
++ETVN+ K+ I+ ++ V R + E D +E+D ++ ++ +L+
Sbjct: 107 KLETVNKSKQSAIDTKETVQQREEQLEHDKCHGSPPHHHELDVAREQYISTTVELDAAKQ 166
Query: 183 NLIHSNKRKTNNSNLVNKRLRNSHHLTDCKKIN-AKIDVLENNVTIQKSPKIELKHKDNV 241
L + + + L + ++N AK++ L ++ K +LK
Sbjct: 167 QLNKIRQSFDSAMDFKATALNQAAEAQRALQVNSAKVNELSKEISDMKDAIHQLKLAAAQ 226
Query: 242 ELQKR---LKTDIDIVDCTSTERE 262
LQ+ +K D+ +C T E
Sbjct: 227 NLQEHANIVKEKDDLRECYRTAVE 250
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 28.7 bits (61), Expect = 5.0
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 3/103 (2%)
Query: 21 TTRLPYRQGRKLTAVKVYTVNNE--STHLLVFGVPSINLRQETKSLVQRYGAIKKFNLTK 78
TT+ P + ++ V E T L+ VP + ++ +SL ++YG++ ++
Sbjct: 68 TTQEPVLESSSSSSSAPEVVEEEISKTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSM 127
Query: 79 EYECEIFTEAYHIQYEKIQSARIAKKYLDCKNYYGGVLHVCYA 121
++ E I+ + A A K L+ Y G L V YA
Sbjct: 128 -HKKERNRGLVFIEMASPEEAATALKSLESCEYEGRRLKVDYA 169
>At3g57290.1 68416.m06377 eukaryotic translation initiation factor
3E / eIF3e (TIF3E1) identical to eukaryotic initiation
factor 3E subunit [Arabidopsis thaliana]
gi|12407658|gb|AAG53613
Length = 441
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 70 AIKKFNLTKEYECEIFTEAYHIQYEKIQSA-RIAKKYLDCKNYYG 113
A+++ K+Y ++ E Y I ++I++ + AK +C NY G
Sbjct: 105 AVQELRADKQYNLQMLKERYQIGPDQIEALYQYAKFQFECGNYSG 149
>At3g49400.1 68416.m05400 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400); low
similarity (47%) to Agamous-like MADS box protein AGL5
(SP:P29385) {Arabidopsis thaliana}
Length = 892
Score = 28.7 bits (61), Expect = 5.0
Identities = 24/109 (22%), Positives = 48/109 (44%), Gaps = 5/109 (4%)
Query: 140 DVFYRLHKNEKDLSFSKKTVVNEIDDVTQEKVAEKAKLNMGNFNLIHSNKRKTNNSNLVN 199
D+ L++N ++F + N +++++V E + + + KR+ ++N +N
Sbjct: 133 DISKMLYENLSSMNFGESK--NPSTSLSKDQVVEHDHEEDERISSLKARKRRKTSANNIN 190
Query: 200 KRLRNSHHLTDCKKINAKIDVLENNVTIQKSPKIELKHKDNVELQKRLK 248
+N C K ++K E+NV + K +D L K LK
Sbjct: 191 LHEKNYTDRASCSKQDSK---AEHNVLEIEVYKQASNGQDRRSLPKALK 236
>At5g57120.1 68418.m07132 expressed protein weak similarity to
SP|Q14978 Nucleolar phosphoprotein p130 {Homo sapiens}
Length = 330
Score = 28.3 bits (60), Expect = 6.6
Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 5/104 (4%)
Query: 147 KNEKDLSFSKKTVVNEIDDVTQEKVAEKAKLNMGNFNL-IHSNKRKTNNSNLVNKRLRNS 205
K E + +++ V E D V ++ V EK K + ++ +K K + ++
Sbjct: 127 KKETKVKVTEEEKVKETDAVIEDGVKEKKKKKSKSKSVEADDDKEKVSKKRKRSEPEETK 186
Query: 206 HHLTD----CKKINAKIDVLENNVTIQKSPKIELKHKDNVELQK 245
D K+ + +V+EN+ +Q++P E + K+N +K
Sbjct: 187 EETEDDDEESKRRKKEENVVENDEGVQETPVKETETKENGNAEK 230
>At5g41810.1 68418.m05090 expressed protein
Length = 288
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 178 NMGNFNLIHSNKRKTNNSNLVN-KRLRNSHHLTDC 211
N N K++TNN+NL N K + S H+ DC
Sbjct: 91 NEENTKKEEEKKKETNNNNLSNMKHKKTSSHVWDC 125
>At3g02930.1 68416.m00288 expressed protein ; expression supported
by MPSS
Length = 806
Score = 28.3 bits (60), Expect = 6.6
Identities = 39/185 (21%), Positives = 84/185 (45%), Gaps = 15/185 (8%)
Query: 123 EMETVNELKEKLIERRKDVFYRLHKNEKDLSFSKKTVVNEIDDVTQEKVAEKAKLNMGNF 182
E+ETVNE K + +++ +D + + L KK +++E++ +E+ EK+K M +
Sbjct: 405 ELETVNEEKTQALKKEQDATSSVQR----LLEEKKKILSELESSKEEE--EKSKKAMESL 458
Query: 183 -NLIH--SNKRKTNNSNLVNKRLRNSHHLTDCKKINAKIDVLENNV-TIQKSPKIELKHK 238
+ +H S++ + L+++ +N + T + + I N + + E+
Sbjct: 459 ASALHEVSSESRELKEKLLSRGDQN--YETQIEDLKLVIKATNNKYENMLDEARHEIDVL 516
Query: 239 DNVELQKRLKTDIDIVDCTSTERETITNINE-ALNYNKFGNEIIR--NIVNKPPNKIIFS 295
N Q + + + +VD E + ++ E + G E+ R N+V + + S
Sbjct: 517 VNAVEQTKKQFESAMVDWEMREAGLVNHVKEFDEEVSSMGKEMNRLGNLVKRTKEEADAS 576
Query: 296 FNKNS 300
+ K S
Sbjct: 577 WEKES 581
>At1g79280.1 68414.m09242 expressed protein weak similarity to
Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
Length = 2111
Score = 28.3 bits (60), Expect = 6.6
Identities = 33/153 (21%), Positives = 60/153 (39%), Gaps = 9/153 (5%)
Query: 123 EMETVNELKEKLIERRKDVFYRLHKNEKDLSFSKKTVVNEIDDVTQEKVAEKAKLNMGNF 182
EM V + K ++ + + + E DL + + D+ +++V E + N
Sbjct: 1315 EMREVAQ-KARMESENFENLLKTKQTELDLCMKEMEKLRMETDLHKKRVDELRE-TYRNI 1372
Query: 183 NLIHSNKRKTNNSNLVNKRLRNSHHLTDCKKINAKIDVLENNVTIQKSPKIELKHKDNVE 242
++ N+ K L K H DCKK+ + +N +++ + K KD E
Sbjct: 1373 DIADYNRLKDEVRQLEEKLKAKDAHAEDCKKVLLE---KQNKISLLEKELTNCK-KDLSE 1428
Query: 243 LQKRLKTDIDIVDCTSTERETITNINEALNYNK 275
+KRL D +T + + L NK
Sbjct: 1429 REKRLD---DAQQAQATMQSEFNKQKQELEKNK 1458
>At1g53020.1 68414.m06002 ubiquitin-conjugating enzyme family
protein similar to ubiquitin-conjugating enzyme
GB:3319990 from [Mus musculus]; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 1163
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/46 (32%), Positives = 28/46 (60%)
Query: 147 KNEKDLSFSKKTVVNEIDDVTQEKVAEKAKLNMGNFNLIHSNKRKT 192
K + D++ +TVV+E + +++AEK + M N N + +K+KT
Sbjct: 490 KFKTDVASFMQTVVDEFVKLGVKELAEKPEPPMSNANTENQSKKKT 535
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/46 (32%), Positives = 28/46 (60%)
Query: 147 KNEKDLSFSKKTVVNEIDDVTQEKVAEKAKLNMGNFNLIHSNKRKT 192
K + D++ +TVV+E + +++AEK K + N N + +K+KT
Sbjct: 1110 KFKTDVASFMQTVVDEFVKLGVKELAEKPKPPVNNANTENQSKKKT 1155
>At5g65930.2 68418.m08300 kinesin-like calmodulin-binding protein
(ZWICHEL) identical to kinesin-like protein GI:2224925
from [Arabidopsis thaliana]
Length = 1260
Score = 27.9 bits (59), Expect = 8.8
Identities = 35/135 (25%), Positives = 65/135 (48%), Gaps = 12/135 (8%)
Query: 123 EMETVNELKEKLIERRKDVFYRLHKNE-KDLSFSKKTVVNEIDDVTQEKVAEKAKL-NMG 180
E+E ++ E +ERRK + L +++ + L K T + + + A AK N
Sbjct: 658 ELEAIHNGLE--LERRKLLEVTLDRDKLRSLCDEKGTTIQSLMSELRGMEARLAKSGNTK 715
Query: 181 NFNLIHSNKRKTNNSNL--VNKRL--RNSH-HLT--DCKKINAKIDVLENNVTIQKSPKI 233
+ S + NN L + K L RN H+ + K++ ++ +LE N+ I+K K
Sbjct: 716 SSKETKSELAEMNNQILYKIQKELEVRNKELHVAVDNSKRLLSENKILEQNLNIEKKKKE 775
Query: 234 ELK-HKDNVELQKRL 247
E++ H+ E +K++
Sbjct: 776 EVEIHQKRYEQEKKV 790
>At5g65930.1 68418.m08299 kinesin-like calmodulin-binding protein
(ZWICHEL) identical to kinesin-like protein GI:2224925
from [Arabidopsis thaliana]
Length = 1259
Score = 27.9 bits (59), Expect = 8.8
Identities = 35/135 (25%), Positives = 65/135 (48%), Gaps = 12/135 (8%)
Query: 123 EMETVNELKEKLIERRKDVFYRLHKNE-KDLSFSKKTVVNEIDDVTQEKVAEKAKL-NMG 180
E+E ++ E +ERRK + L +++ + L K T + + + A AK N
Sbjct: 657 ELEAIHNGLE--LERRKLLEVTLDRDKLRSLCDEKGTTIQSLMSELRGMEARLAKSGNTK 714
Query: 181 NFNLIHSNKRKTNNSNL--VNKRL--RNSH-HLT--DCKKINAKIDVLENNVTIQKSPKI 233
+ S + NN L + K L RN H+ + K++ ++ +LE N+ I+K K
Sbjct: 715 SSKETKSELAEMNNQILYKIQKELEVRNKELHVAVDNSKRLLSENKILEQNLNIEKKKKE 774
Query: 234 ELK-HKDNVELQKRL 247
E++ H+ E +K++
Sbjct: 775 EVEIHQKRYEQEKKV 789
>At5g40450.1 68418.m04905 expressed protein
Length = 2910
Score = 27.9 bits (59), Expect = 8.8
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 123 EMETVNELKEKLIERRKDVFYRLHKNEKDLSFSKKTVVNEIDDVTQEKVA--EKAKLNMG 180
E ET ELKE++ + KD H E+D+ + +D T E+ A + + N+
Sbjct: 1311 ESETSLELKEEVDQSSKDTEEHEHVLERDIPQCETLKAEAVDTSTVEEAAILKTLETNIS 1370
Query: 181 NFNLIHS 187
+HS
Sbjct: 1371 EPEAMHS 1377
>At3g18100.2 68416.m02302 myb family transcription factor (MYB4R1)
contains Pfam profile: PF00249 Myb-like DNA-binding
domain
Length = 634
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 125 ETVNELKEKLIERRKDVFYRLHKNEKDLSFSKKTVVNEIDDVTQEKVAEKAK 176
E + KEK +RRK V + +NE + ++ + E D+ Q+ EK K
Sbjct: 544 EIQDNAKEKPKQRRKSVAETVCENEPNNGGEERMLALECDNEIQDNAKEKRK 595
>At3g18100.1 68416.m02301 myb family transcription factor (MYB4R1)
contains Pfam profile: PF00249 Myb-like DNA-binding
domain
Length = 847
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 125 ETVNELKEKLIERRKDVFYRLHKNEKDLSFSKKTVVNEIDDVTQEKVAEKAK 176
E + KEK +RRK V + +NE + ++ + E D+ Q+ EK K
Sbjct: 757 EIQDNAKEKPKQRRKSVAETVCENEPNNGGEERMLALECDNEIQDNAKEKRK 808
>At3g05270.1 68416.m00575 expressed protein similar to
endosome-associated protein (EEA1) (GI:1016368) [Homo
sapiens]; similar to smooth muscle myosin heavy chain
(GI:4417214) [Homo sapiens; contains Pfam profile
PF05911: Plant protein of unknown function (DUF869)
Length = 615
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/59 (27%), Positives = 31/59 (52%)
Query: 212 KKINAKIDVLENNVTIQKSPKIELKHKDNVELQKRLKTDIDIVDCTSTERETITNINEA 270
+++ A+ DV ++V PK+E K+N L+ +L + + V + ER+ T E+
Sbjct: 170 EELQARQDVTTSSVHEDLYPKLEALEKENSALKLQLLSKSEEVKIRTIERDLSTQAAES 228
>At1g27640.1 68414.m03377 expressed protein
Length = 147
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 214 INAKIDVLENNVTIQKSPKIELKHKDNVELQKRL--KTDIDIVDCTS--TERETITNINE 269
I ++ + + I+K K KH+D LQ R D ++D S ERE++ N+ E
Sbjct: 3 IKSETEQYKRKAEIEKHTKEPNKHRDEAVLQNRAGRHRDRAVIDHKSEERERESVQNVTE 62
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.315 0.131 0.365
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,995,947
Number of Sequences: 28952
Number of extensions: 290397
Number of successful extensions: 768
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 753
Number of HSP's gapped (non-prelim): 38
length of query: 300
length of database: 12,070,560
effective HSP length: 81
effective length of query: 219
effective length of database: 9,725,448
effective search space: 2129873112
effective search space used: 2129873112
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 59 (27.9 bits)
- SilkBase 1999-2023 -