GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001703-TA|BGIBMGA001703-PA|IPR003599|Immunoglobulin
subtype, IPR003598|Immunoglobulin subtype 2,
IPR007110|Immunoglobulin-like, IPR008957|Fibronectin, type III-like
fold, IPR013151|Immunoglobulin, IPR013098|Immunoglobulin I-set
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomy...    31   0.49 
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    29   1.5  
SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar...    28   3.5  
SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr 3||...    27   4.6  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    27   8.0  
SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1 |Schizosa...    27   8.0  

>SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 30.7 bits (66), Expect = 0.49
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 257 VLYPPEITVERSWVHTGEGFRAELVCTVLADPPAEVSWYQNSFPLSASERVTMSARG 313
           ++ P   T+  S++HT +GF +   C ++   P    W  +S  L      T SA+G
Sbjct: 258 LIVPATFTIIDSFIHTYDGFSSMTQCLLIISLPLSSLW-ASSTALKLQSMKTSSAQG 313


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 18/58 (31%), Positives = 25/58 (43%)

Query: 66  TAASLMVTRDERFRLVDGYNLQITDVGPQIRYTVDVTIYENSETSVALAILGATGHTN 123
           TA +   T  E      G NL  ++  PQI  T+  + +     SVAL+    T  TN
Sbjct: 278 TATTAQQTTSENTYSTSGPNLTTSNTSPQISSTISSSSFIVESPSVALSTSSTTTITN 335


>SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 236

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 296 QNSFPLSASERVTMSARGSNHTLLIADVQPE 326
           +N F L  + +    A+G  HTL IADVQ +
Sbjct: 33  RNEFHLKETLQSLSVAKGQQHTLTIADVQSD 63


>SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 264

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 337 NSLGRARRHVEVSGRPGPARFTSPPLARAPHSYT 370
           N L +  RHV++SG     R+TS P     +S T
Sbjct: 179 NELAQVWRHVDISGSQTTTRYTSFPKFNPENSVT 212


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 17/46 (36%), Positives = 21/46 (45%)

Query: 348 VSGRPGPARFTSPPLARAPHSYTLSFAVDSYPPLDELRLLYRQLAI 393
           +S   G + F    L R P SYTLS+  +  P    L LL   L I
Sbjct: 820 ISTGDGCSDFIKELLYRRPFSYTLSYVCEQIPDHWNLNLLADFLCI 865


>SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 396

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 11/20 (55%), Positives = 12/20 (60%)

Query: 115 ILGATGHTNVWETTRRITSE 134
           I  A GH  +WE  RRIT E
Sbjct: 281 IAAAPGHPILWELVRRITDE 300


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.134    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,209,064
Number of Sequences: 5004
Number of extensions: 88846
Number of successful extensions: 184
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 177
Number of HSP's gapped (non-prelim): 7
length of query: 500
length of database: 2,362,478
effective HSP length: 76
effective length of query: 424
effective length of database: 1,982,174
effective search space: 840441776
effective search space used: 840441776
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)