GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001703-TA|BGIBMGA001703-PA|IPR003599|Immunoglobulin
subtype, IPR003598|Immunoglobulin subtype 2,
IPR007110|Immunoglobulin-like, IPR008957|Fibronectin, type III-like
fold, IPR013151|Immunoglobulin, IPR013098|Immunoglobulin I-set
         (500 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0271 + 2097027-2098583                                           33   0.70 
01_07_0056 - 40787723-40788124,40788236-40788430,40788914-40789309     31   2.8  
06_03_1007 + 26869731-26870429,26871262-26871387                       29   6.5  
07_01_0523 - 3879550-3880134,3880313-3880491,3881519-3882383           29   8.6  
06_02_0176 + 12637287-12637376,12638108-12638280,12638631-126387...    29   8.6  
01_05_0634 + 23843152-23843272,23843441-23843628,23843876-238442...    29   8.6  

>03_01_0271 + 2097027-2098583
          Length = 518

 Score = 32.7 bits (71), Expect = 0.70
 Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 5/87 (5%)

Query: 28  LSRGHSFRTVVGDTLLLPCQVQNLGSLVLLWRRAPAVLTAASLMVTRDERFRLVDGYNLQ 87
           L  GH+ R   GD +L+P  V ++G +  +W +           VT D + R V  +   
Sbjct: 403 LPSGHTVRA--GDNILIP--VYSMGRMASVWGKDSGEYRPER-WVTEDGKLRHVPAHRFM 457

Query: 88  ITDVGPQIRYTVDVTIYENSETSVALA 114
             + GP++    D+++ +    + A+A
Sbjct: 458 PFNAGPRLCLGKDISVLQMKSVAAAVA 484


>01_07_0056 - 40787723-40788124,40788236-40788430,40788914-40789309
          Length = 330

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 4/61 (6%)

Query: 186 ARRGGAAVLECRAA-GNPVPTVTWHRLNDSSSRLGEGPQLQLSRLERHHGGVYACTVDNG 244
           A RG  A  + RAA G P  +V W +L+ + +   EG     + +ER HGGV+    + G
Sbjct: 81  AARGRDATEQIRAAAGKPGVSVEWRQLDVTDAASVEG---FATWVERTHGGVHVLVNNAG 137

Query: 245 V 245
           V
Sbjct: 138 V 138


>06_03_1007 + 26869731-26870429,26871262-26871387
          Length = 274

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 440 AKNRYGWNEVSDIFQFHTLGGPHTAHADELTPMFSAAPEPRLTQSLSVLV 489
           A N  GW+E S     + LGGPH+    E  P FS     R  + L +++
Sbjct: 211 ADNEEGWDECSCSEAPNALGGPHSFRTTE-APAFSFIASVRWKKRLLIVL 259


>07_01_0523 - 3879550-3880134,3880313-3880491,3881519-3882383
          Length = 542

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 4/64 (6%)

Query: 336 DNSLGRARRHVEVSGRPGPARFTSPPLARAPHSYTLSFAVDSYPPLDELRLLYRQLAINE 395
           + + G AR   E + R G   +T PP A A   +  +FAV       E R +YR++ ++ 
Sbjct: 213 ERARGMAREWKEAAERKGGVEWTKPPDAHAFLQHVATFAVAE----REDRGIYRRIVVSF 268

Query: 396 SFQQ 399
           S+++
Sbjct: 269 SWRR 272


>06_02_0176 +
           12637287-12637376,12638108-12638280,12638631-12638743,
           12639125-12639313,12639397-12639464,12639601-12639684,
           12639791-12639844,12640445-12640525,12640615-12640708,
           12640830-12640903,12640976-12641086,12641299-12641355,
           12641458-12641562,12641656-12641772,12641900-12642003,
           12642229-12642394,12642513-12642641
          Length = 602

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 4/76 (5%)

Query: 347 EVSGRPGPARFTSPPLARAPHSYTLSFAVDSYPPLDELRLLYRQLAINESFQQPGRWHDV 406
           ++   PGP +F  P     P    +S  V+    +  ++ L   L   +S  +PG   DV
Sbjct: 518 DIYRNPGPLQFEGPGGETKP----ISLCVEDRDYMGRIKQLQEYLEKVKSIVKPGCSQDV 573

Query: 407 VLAAPAAKGSLTHRVS 422
           + AA +A  S+T  ++
Sbjct: 574 LKAALSAMASVTEMLT 589


>01_05_0634 +
           23843152-23843272,23843441-23843628,23843876-23844205,
           23844319-23844565,23844591-23844668,23844740-23845024,
           23845139-23845225,23845365-23845415,23845625-23845761,
           23845853-23846437
          Length = 702

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 13/35 (37%), Positives = 22/35 (62%)

Query: 286 ADPPAEVSWYQNSFPLSASERVTMSARGSNHTLLI 320
           ADPP+EV +  N+ P  + E + +S  GS+ +L +
Sbjct: 124 ADPPSEVFFSYNATPGRSEEIIGLSISGSSSSLFL 158


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.134    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,685,938
Number of Sequences: 37544
Number of extensions: 688639
Number of successful extensions: 1473
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1471
Number of HSP's gapped (non-prelim): 7
length of query: 500
length of database: 14,793,348
effective HSP length: 85
effective length of query: 415
effective length of database: 11,602,108
effective search space: 4814874820
effective search space used: 4814874820
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)