GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001703-TA|BGIBMGA001703-PA|IPR003599|Immunoglobulin
subtype, IPR003598|Immunoglobulin subtype 2,
IPR007110|Immunoglobulin-like, IPR008957|Fibronectin, type III-like
fold, IPR013151|Immunoglobulin, IPR013098|Immunoglobulin I-set
         (500 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67520.1 68414.m07692 lectin protein kinase family protein co...    29   7.1  
At3g42060.1 68416.m04315 myosin heavy chain-related                    29   9.4  

>At1g67520.1 68414.m07692 lectin protein kinase family protein
           contains Pfam domains PF00069: Protein kinase domain and
           PF01453: Lectin (probable mannose binding)
          Length = 587

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 48  VQNLGSLVLLWRRAPAVLTAASLMVTRDERFRLVDGYNLQITDV 91
           V +LG L +L R A  +L  +S+  TR+   +L+D  NLQ+ ++
Sbjct: 97  VDSLGRLKIL-RGASTMLELSSIETTRNTTLQLLDSGNLQLQEM 139


>At3g42060.1 68416.m04315 myosin heavy chain-related
          Length = 712

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 12/100 (12%)

Query: 145 FQDAGDYVCQISDRVARDQ-VH--------TVEV-LVPPSVRASPETRHVTARRGGAAVL 194
           F D  + VC+   +V  D+ +H        TV+V +V P V        V A R G  VL
Sbjct: 383 FDDDEELVCEDEPQVPIDEPIHEGSAEATDTVDVCVVKPEVPNKDRGTEVAAARAGKKVL 442

Query: 195 ECRAAGNPVPTV--TWHRLNDSSSRLGEGPQLQLSRLERH 232
           +      P P+V  +  R  DSS R  E     + +  RH
Sbjct: 443 KETTGSVPFPSVGGSRSRKRDSSRRSPETGPSNVGKPPRH 482


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.134    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,803,503
Number of Sequences: 28952
Number of extensions: 492762
Number of successful extensions: 930
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 930
Number of HSP's gapped (non-prelim): 2
length of query: 500
length of database: 12,070,560
effective HSP length: 84
effective length of query: 416
effective length of database: 9,638,592
effective search space: 4009654272
effective search space used: 4009654272
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)