Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001702-TA|BGIBMGA001702-PA|undefined
         (117 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   3.1  
AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    21   3.1  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    21   4.1  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    21   4.1  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    21   4.1  
L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protei...    20   5.5  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    20   5.5  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 3.1
 Identities = 7/19 (36%), Positives = 10/19 (52%)

Query: 6   LCTGRMDRMEHCKGHMATH 24
           +C  R  R +H   H+ TH
Sbjct: 379 ICNKRFMRSDHLAKHVKTH 397


>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 3.1
 Identities = 10/32 (31%), Positives = 15/32 (46%)

Query: 41  MSYTARSMYTKRTRRMGRTVAGRGRTVAGTDY 72
           +SY  R +Y K   R+  T+  +  T A   Y
Sbjct: 353 LSYVPREVYNKEISRLVETLKFQSITSAVVTY 384


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 20.6 bits (41), Expect = 4.1
 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)

Query: 74  VADGRRME-ISMGSTGLGTDTGYNFGSSS 101
           VADG +   +      L  D+GY+ G+SS
Sbjct: 122 VADGHQHHFLHENKYQLEVDSGYHLGASS 150


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 20.6 bits (41), Expect = 4.1
 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)

Query: 74  VADGRRME-ISMGSTGLGTDTGYNFGSSS 101
           VADG +   +      L  D+GY+ G+SS
Sbjct: 122 VADGHQHHFLHENKYQLEVDSGYHLGASS 150


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 20.6 bits (41), Expect = 4.1
 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)

Query: 74  VADGRRME-ISMGSTGLGTDTGYNFGSSS 101
           VADG +   +      L  D+GY+ G+SS
Sbjct: 122 VADGHQHHFLHENKYQLEVDSGYHLGASS 150


>L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protein
          protein.
          Length = 74

 Score = 20.2 bits (40), Expect = 5.5
 Identities = 8/18 (44%), Positives = 8/18 (44%)

Query: 7  CTGRMDRMEHCKGHMATH 24
          C  R  R  H K HM  H
Sbjct: 15 CHKRFTRDHHLKTHMRLH 32


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 20.2 bits (40), Expect = 5.5
 Identities = 8/18 (44%), Positives = 8/18 (44%)

Query: 7   CTGRMDRMEHCKGHMATH 24
           C  R  R  H K HM  H
Sbjct: 168 CHKRFTRDHHLKTHMRLH 185


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.132    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,965
Number of Sequences: 317
Number of extensions: 729
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 117
length of database: 114,650
effective HSP length: 50
effective length of query: 67
effective length of database: 98,800
effective search space:  6619600
effective search space used:  6619600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.5 bits)
S2: 38 (19.4 bits)