Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001702-TA|BGIBMGA001702-PA|undefined
         (117 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51134| Best HMM Match : Fibrinogen_C (HMM E-Value=3.1e-09)          32   0.10 
SB_32076| Best HMM Match : Peptidase_A17 (HMM E-Value=0)               30   0.42 
SB_50164| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.56 
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)                  29   0.74 
SB_40166| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.98 
SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   1.7  
SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)                 28   2.3  
SB_39769| Best HMM Match : DUF1641 (HMM E-Value=7.1)                   27   3.0  
SB_15549| Best HMM Match : ADH_zinc_N (HMM E-Value=9.4e-13)            27   3.0  
SB_33873| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.9  
SB_14567| Best HMM Match : MFS_1 (HMM E-Value=1.1)                     27   3.9  
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             27   5.2  
SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)                      26   6.9  
SB_6589| Best HMM Match : zf-C2H2 (HMM E-Value=1.2e-36)                26   6.9  
SB_52135| Best HMM Match : RCSD (HMM E-Value=4.8)                      26   9.1  
SB_34108| Best HMM Match : DUF714 (HMM E-Value=0.0053)                 26   9.1  

>SB_51134| Best HMM Match : Fibrinogen_C (HMM E-Value=3.1e-09)
          Length = 382

 Score = 32.3 bits (70), Expect = 0.10
 Identities = 18/52 (34%), Positives = 26/52 (50%)

Query: 45  ARSMYTKRTRRMGRTVAGRGRTVAGTDYAVADGRRMEISMGSTGLGTDTGYN 96
           ARS+  +R  RMGR+  G+ RT+        DG R+  +    G G+  G N
Sbjct: 314 ARSIEFQRVHRMGRSFNGKPRTLLARFLRYEDGERVVSTRRQFGEGSAYGIN 365


>SB_32076| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 2352

 Score = 30.3 bits (65), Expect = 0.42
 Identities = 18/70 (25%), Positives = 29/70 (41%)

Query: 36  SRMGQMSYTARSMYTKRTRRMGRTVAGRGRTVAGTDYAVADGRRMEISMGSTGLGTDTGY 95
           SR+ +  +  R   T  ++  GR     GR + G+   VA G+  +       +    G 
Sbjct: 624 SRLAEGGFNLRKWQTNDSKLRGRVDVSEGRCMPGSQEGVARGKTSQGVASDCDIQKVLGL 683

Query: 96  NFGSSSATAG 105
            + SSS T G
Sbjct: 684 PWNSSSDTIG 693


>SB_50164| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1780

 Score = 29.9 bits (64), Expect = 0.56
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 6   LCTGRMDRMEHCKGHMATHRD 26
           +C+    R +H  GHM THRD
Sbjct: 529 ICSKGFKRQDHLNGHMVTHRD 549


>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
          Length = 690

 Score = 29.5 bits (63), Expect = 0.74
 Identities = 24/64 (37%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 45  ARSMYTKRTR-RMGRTVAGRGRTVAGTDYAVADGRRMEISMGS-TGLGTDTGYNFGSSSA 102
           AR+   KR R R   T A   R+    DY  +D R    +  S  G G  +GY  GSSS 
Sbjct: 423 ARNFGKKRDRFRRDNTYARDLRSNPKPDYNRSDSRSSYNNSSSMNGYGGGSGYGGGSSSR 482

Query: 103 TAGG 106
             GG
Sbjct: 483 GGGG 486


>SB_40166| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 932

 Score = 29.1 bits (62), Expect = 0.98
 Identities = 18/70 (25%), Positives = 28/70 (40%)

Query: 36  SRMGQMSYTARSMYTKRTRRMGRTVAGRGRTVAGTDYAVADGRRMEISMGSTGLGTDTGY 95
           SR+ +  +  R   T  +   G    G GR + G+   VA G+  +       +    G 
Sbjct: 483 SRLAEGGFNLRKWQTNDSELRGSLDVGEGRCMPGSQEGVARGKTSQGVASDCDIQKVLGL 542

Query: 96  NFGSSSATAG 105
            + SSS T G
Sbjct: 543 PWNSSSDTIG 552


>SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2202

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 50  TKRTRRMGRTVAGRGRTVAGTDYAVAD-GRRMEISMGSTGLGTDT-GYNFGSSSATAG 105
           T  +   G T  G G T +GT  +  + G     S G+TG GT T G N GS + T G
Sbjct: 527 TTSSGESGTTSTG-GNTGSGTTSSGGNTGSGTTSSGGNTGSGTTTGGVNTGSGTTTGG 583


>SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)
          Length = 440

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 14/31 (45%), Positives = 16/31 (51%)

Query: 37  RMGQMSYTARSMYTKRTRRMGRTVAGRGRTV 67
           R G   YTA   YT RTR+MG  V    R +
Sbjct: 75  RNGVGGYTAAGGYTARTRQMGPPVRSEFRVI 105


>SB_39769| Best HMM Match : DUF1641 (HMM E-Value=7.1)
          Length = 66

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 12/25 (48%), Positives = 17/25 (68%)

Query: 45 ARSMYTKRTRRMGRTVAGRGRTVAG 69
          A+SM T + R++G+ VA  GR V G
Sbjct: 8  AKSMQTDQGRKIGQAVAQTGRAVGG 32


>SB_15549| Best HMM Match : ADH_zinc_N (HMM E-Value=9.4e-13)
          Length = 562

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 14/55 (25%), Positives = 23/55 (41%)

Query: 9   GRMDRMEHCKGHMATHRDCMDHKAGRTSRMGQMSYTARSMYTKRTRRMGRTVAGR 63
           G +    HC   +   ++C +  A    R G++   AR   T+R R  G+    R
Sbjct: 413 GMIKLKRHCMLFLPMEQNCCNSSAKSADRNGRVIVRARRAVTRRGRGRGKRKKSR 467


>SB_33873| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1362

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 17/70 (24%), Positives = 28/70 (40%)

Query: 36  SRMGQMSYTARSMYTKRTRRMGRTVAGRGRTVAGTDYAVADGRRMEISMGSTGLGTDTGY 95
           SR+ +  +  R   T  +   G      GR + G+  +VA G+  +       +    G 
Sbjct: 873 SRLAEGGFNLRKWQTNDSELRGSLDVSEGRCMPGSQESVARGKTSQGVASDCDIQKVLGL 932

Query: 96  NFGSSSATAG 105
            + SSS T G
Sbjct: 933 PWNSSSDTIG 942


>SB_14567| Best HMM Match : MFS_1 (HMM E-Value=1.1)
          Length = 600

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 13/32 (40%), Positives = 15/32 (46%)

Query: 23  THRDCMDHKAGRTSRMGQMSYTARSMYTKRTR 54
           THR    H  GRTS  G   +     Y +RTR
Sbjct: 484 THRHFAKHDIGRTSIYGNPRFRRHIGYPRRTR 515


>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 6725

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 9/68 (13%)

Query: 16  HCKGHMATHRDCMDHKAGRTSRMGQMSYTARSMYTK-RTRRMGRTVAGRGRTVAGTDYAV 74
           HCK H+  + DC D       R G  S   R + +  + RR+  T  GRG       +  
Sbjct: 797 HCK-HLDPNADCED-------RCGPGSSNLRPILSPCQRRRLLGTALGRGNVEGYIPHCK 848

Query: 75  ADGRRMEI 82
           +DGR  E+
Sbjct: 849 SDGRYEEV 856


>SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)
          Length = 1365

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 8   TGRMDRMEHCKGHMATHRDCM---DHKAGRTSRMGQMSYTARSMYTKRTRRMGRTVAGRG 64
           T  M    H +G +    D     D+  G+T   GQ++   R+ Y  RT     T    G
Sbjct: 168 TATMTGQTHGQGQLLDRTDTWTWTDNTTGQTPGQGQITRPDRNSYYDRTDTWTGTATTNG 227

Query: 65  RTV 67
           +T+
Sbjct: 228 QTL 230


>SB_6589| Best HMM Match : zf-C2H2 (HMM E-Value=1.2e-36)
          Length = 651

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 3/71 (4%)

Query: 3   HK-ELCTGRMDRMEHCKGHMATHRDCMDHKAGRTSR-MGQMSYTARSMYTKRTRRMGR-T 59
           HK + C     ++ H K HM TH D   +K     +   Q S     ++    +R  +  
Sbjct: 553 HKCKKCGRAFKQLTHLKYHMRTHSDVRMYKCPYCDKGFNQKSNLQAHIFGHTGQRPHKCD 612

Query: 60  VAGRGRTVAGT 70
           V G+G T+A T
Sbjct: 613 VCGKGFTLAST 623


>SB_52135| Best HMM Match : RCSD (HMM E-Value=4.8)
          Length = 476

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 3/42 (7%)

Query: 2   GHKELCTGRMDRMEHCKGHMATHRDCMDHKAGRTSRMGQMSY 43
           GH +  TG  D++     H+  H    DH  GR+  +   SY
Sbjct: 349 GHSDHVTGHSDQVTGHSDHVTDHN---DHVTGRSDHVTGHSY 387


>SB_34108| Best HMM Match : DUF714 (HMM E-Value=0.0053)
          Length = 455

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 2/71 (2%)

Query: 9   GRMDRMEHCKGHMATHRDCMDHKAGRTSRMGQMSYTARSMYTKRTRRMGRTVAGRGRTVA 68
           GR     H      T  +      GRT+  G+ +   R+    RT   GRT   R  T+ 
Sbjct: 263 GRTTTEGHTTNEGRTTTEGRTTAEGRTTTEGRTTNEGRTTNEGRTTTEGRTTTERRPTIE 322

Query: 69  GTDYAVADGRR 79
           G      +GR+
Sbjct: 323 GR--TTTEGRK 331


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.132    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,639,407
Number of Sequences: 59808
Number of extensions: 128296
Number of successful extensions: 338
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 313
Number of HSP's gapped (non-prelim): 31
length of query: 117
length of database: 16,821,457
effective HSP length: 73
effective length of query: 44
effective length of database: 12,455,473
effective search space: 548040812
effective search space used: 548040812
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)