GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001702-TA|BGIBMGA001702-PA|undefined
         (117 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.13c |pts1||20S proteasome component beta 5|Schizosacchar...    26   1.3  
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    25   2.3  
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    25   3.1  
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    25   3.1  
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces...    25   4.1  
SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch...    25   4.1  

>SPAC4A8.13c |pts1||20S proteasome component beta
           5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 272

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 13/40 (32%), Positives = 20/40 (50%)

Query: 56  MGRTVAGRGRTVAGTDYAVADGRRMEISMGSTGLGTDTGY 95
           MG  +AG G+      Y  +DG R++  + S G G+   Y
Sbjct: 158 MGTMLAGTGKGGTALYYIDSDGTRLKGDLFSVGSGSTFAY 197


>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 65  RTVAGTDYAVADGRRMEISMGST 87
           R +A  D +V+DGR +  S G+T
Sbjct: 180 RAIAAIDGSVSDGRHLRASYGTT 202


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 25.0 bits (52), Expect = 3.1
 Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 6/72 (8%)

Query: 6   LCTGRMDRMEHCKGHMATHRDCMDHK------AGRTSRMGQMSYTARSMYTKRTRRMGRT 59
           LCT    R+EH   H+ TH     H       A R SR  +++  AR      +RR    
Sbjct: 30  LCTKAFYRLEHQTRHIRTHTGEKPHVCTFPGCAKRFSRSDELTRHARIHTNANSRRNAAA 89

Query: 60  VAGRGRTVAGTD 71
            A    +   ++
Sbjct: 90  AAAANNSARSSN 101


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 567

 Score = 25.0 bits (52), Expect = 3.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 5  ELCTGRMDRMEHCKGHMATH 24
          E CT    R+EH K H+ +H
Sbjct: 73 ETCTRAFARLEHLKRHIRSH 92


>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 735

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 44 TARSMYTKRTRRMGRTVAGRGRTVA 68
          TA+S Y+K T    R  AGR RT++
Sbjct: 25 TAKSYYSKDTDLSTRVSAGRPRTLS 49


>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 509

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query: 64  GRTVAGTDYAVADGRRM 80
           G TV GTDY ++ G  M
Sbjct: 100 GLTVGGTDYPISSGHEM 116


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.132    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 434,306
Number of Sequences: 5004
Number of extensions: 12917
Number of successful extensions: 25
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 6
length of query: 117
length of database: 2,362,478
effective HSP length: 65
effective length of query: 52
effective length of database: 2,037,218
effective search space: 105935336
effective search space used: 105935336
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 48 (23.4 bits)