Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001702-TA|BGIBMGA001702-PA|undefined
(117 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0423 + 3337401-3337419,3337777-3338235,3338650-3338735,333... 28 1.7
06_03_0906 - 25846424-25846462,25846640-25847014,25847105-258471... 28 1.7
09_03_0167 + 12965030-12965356,12966100-12966387,12966704-129668... 28 2.2
04_04_0690 - 27300048-27300929 27 2.9
01_01_0215 - 1838452-1838685,1839125-1839240,1840200-1840734 27 2.9
12_01_0126 - 953586-953637,953890-954554 27 5.0
11_01_0116 - 896184-896849 27 5.0
10_08_0653 + 19606476-19606752,19607210-19608436,19614698-19614942 27 5.0
10_08_0226 - 16001958-16002527 27 5.0
07_01_0628 - 4691991-4692806,4694291-4694293,4694527-4694637 27 5.0
03_01_0589 - 4358097-4358216,4359752-4359844 27 5.0
02_02_0182 - 7547671-7548501,7549236-7549310,7550520-7550744 27 5.0
02_01_0002 - 9542-9762,11085-11196,11328-12575 27 5.0
10_08_0229 - 16016818-16017387 26 6.7
08_02_0105 + 12448808-12449152,12449218-12449409,12449520-124496... 26 6.7
03_05_0245 - 22313143-22313427 26 6.7
03_03_0181 + 15162681-15162806,15164026-15164172,15164269-151643... 26 6.7
11_02_0074 + 8025319-8025340,8025510-8025726,8026066-8026345 26 8.8
11_01_0170 - 1373986-1374013,1374061-1374326,1374693-1374926,137... 26 8.8
08_02_0292 - 15420378-15421229 26 8.8
07_03_1369 + 26087947-26088039,26088396-26089073 26 8.8
05_03_0506 - 14801920-14802219 26 8.8
01_07_0294 + 42571700-42573373,42573653-42573720,42573785-425738... 26 8.8
01_01_0667 + 5099026-5099188,5099262-5099661,5099748-5100648 26 8.8
>12_01_0423 +
3337401-3337419,3337777-3338235,3338650-3338735,
3338974-3339022,3339225-3339533,3339555-3339710,
3339871-3340086,3340404-3340906,3341050-3341116,
3341215-3341272,3341561-3341699,3341840-3341956,
3342069-3342246,3342459-3343093
Length = 996
Score = 28.3 bits (60), Expect = 1.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 83 SMGSTGLGTDTGYNFGSSSATAG 105
+ GSTG G+ T FGSS +T G
Sbjct: 290 AFGSTGFGSSTTPGFGSSGSTPG 312
>06_03_0906 -
25846424-25846462,25846640-25847014,25847105-25847139,
25847283-25847382,25847476-25847553,25847628-25847678,
25847804-25847929,25848021-25848138,25848476-25848483
Length = 309
Score = 28.3 bits (60), Expect = 1.7
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Query: 31 KAGRTSRM--GQMSYTARSMYTKRTRRMGRTVAGRGRTVAGTDYAVADGRRMEISMGSTG 88
K G TSR+ G+ A +++TR+ G G+ G+DY+ DG E + ST
Sbjct: 222 KRGATSRVARGKQKRDAIGALSRKTRKNGG-----GKEKPGSDYSEDDGETAEPNKVSTS 276
Query: 89 LGTDTGYNFGSSSATAGGP 107
+ SS TA P
Sbjct: 277 SKGEKADPVRRSSRTASKP 295
>09_03_0167 +
12965030-12965356,12966100-12966387,12966704-12966826,
12967229-12967611,12967863-12968190,12968324-12968353,
12968837-12968989,12969510-12969815
Length = 645
Score = 27.9 bits (59), Expect = 2.2
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 30 HKAGRTSRMGQMSYTARSMYTKRTRRMGRTV 60
H+ GRT+R GQ S S+YT+ R + R V
Sbjct: 505 HRVGRTARAGQ-SGIVTSLYTEANRDLVRAV 534
>04_04_0690 - 27300048-27300929
Length = 293
Score = 27.5 bits (58), Expect = 2.9
Identities = 17/49 (34%), Positives = 18/49 (36%)
Query: 57 GRTVAGRGRTVAGTDYAVADGRRMEISMGSTGLGTDTGYNFGSSSATAG 105
G T AG G T AG V S+G G D G SA G
Sbjct: 58 GDTGAGAGDTGAGAGAKVGVATGARTGAASSGAGADVGGAVAGGSAAGG 106
>01_01_0215 - 1838452-1838685,1839125-1839240,1840200-1840734
Length = 294
Score = 27.5 bits (58), Expect = 2.9
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 39 GQMSYTARSMYTKRT-RRMGRTVAGRGRTVAGTDYAVADGRRMEISMGSTGLGTDTGYNF 97
G M+ TA + +R R G + RG G ++DG R +S G G
Sbjct: 33 GSMTATAEGLTRRRRPRSWGTRLGDRGGLDDGDRRRLSDGDRGGLSDDDGGSSGGDGVGG 92
Query: 98 GSSSATAGGP 107
GS+S+ P
Sbjct: 93 GSASSACSPP 102
>12_01_0126 - 953586-953637,953890-954554
Length = 238
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 18 KGHMATHRDCMDHKAGRTSRMGQMSYTARSMYTKRTRRM 56
KG++A DC D + R + + M + + T R +RM
Sbjct: 55 KGNLAFRLDCYDSTSSRRADLVLMDAAGKPLLTIRRKRM 93
>11_01_0116 - 896184-896849
Length = 221
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 18 KGHMATHRDCMDHKAGRTSRMGQMSYTARSMYTKRTRRM 56
KG++A DC D + R + + M + + T R +RM
Sbjct: 55 KGNLAFRLDCYDSTSSRRADLVLMDAAGKPLLTIRRKRM 93
>10_08_0653 + 19606476-19606752,19607210-19608436,19614698-19614942
Length = 582
Score = 26.6 bits (56), Expect = 5.0
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 63 RGRTVAGTDYAVADGRRMEISMGSTGLGTDTGYNFGSSSATAGGPV 108
RG G D +G E+ G G+G DT + G G P+
Sbjct: 51 RGGEGGGVDARSGEGED-EVGRGGVGVGVDTRGSEGGGEVARGAPL 95
>10_08_0226 - 16001958-16002527
Length = 189
Score = 26.6 bits (56), Expect = 5.0
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 62 GRGRTVAGTDYAVADGRRMEISMGSTGLGTDTGYNFGSSSATAGGPVPLRS 112
G + G VA G+ + GS G GT TG GS++A GG P S
Sbjct: 103 GGSASAGGGGGGVAGGQAGGVD-GSGGYGTGTGSGTGSAAAD-GGASPTSS 151
>07_01_0628 - 4691991-4692806,4694291-4694293,4694527-4694637
Length = 309
Score = 26.6 bits (56), Expect = 5.0
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 67 VAGTDYAVADGRRMEISMGSTGLGTDTGYNFGSSSATAG 105
+ G DGR + ++ + TD GY +G G
Sbjct: 66 IRGMHNGELDGRTISVNKAQPRMNTDDGYGYGGGGGGGG 104
>03_01_0589 - 4358097-4358216,4359752-4359844
Length = 70
Score = 26.6 bits (56), Expect = 5.0
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 11 MDRMEHCKGHMATHRDCMDHKAGRTSRMGQMSYTARSMYTKRTRRMGRTVAGRGRTVAGT 70
MDR +C T + +D KA R + ++ + T R +TV+G V GT
Sbjct: 3 MDRDANCAVQRTTELE-LDRKAARLEGIPRIMNLVKLKITLCKRLCEKTVSGAFAAVPGT 61
Query: 71 DYAVA 75
A A
Sbjct: 62 SSACA 66
>02_02_0182 - 7547671-7548501,7549236-7549310,7550520-7550744
Length = 376
Score = 26.6 bits (56), Expect = 5.0
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 58 RTVAGRGRTVAGTDYAVADGRRMEISMGSTGLGTDTG 94
R ++G VAG D +AD R E + G G G TG
Sbjct: 309 RVMSGACSPVAGGDVQMADAARREFAFGGEG-GKMTG 344
>02_01_0002 - 9542-9762,11085-11196,11328-12575
Length = 526
Score = 26.6 bits (56), Expect = 5.0
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 33 GRTSRMGQMSYTARSMYTKRTRRMGRTVAGRGR 65
G T R GQ+S RS+ KR+ + R+ AGRG+
Sbjct: 417 GATLRRGQLSQ--RSIKKKRSFKRQRSQAGRGK 447
>10_08_0229 - 16016818-16017387
Length = 189
Score = 26.2 bits (55), Expect = 6.7
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 63 RGRTVAGTDYAVADGRRMEISMGSTGLGTDTGYNFGSSSATAG 105
RG + AG G R + GS+G G+ +G GSS++ G
Sbjct: 105 RGSSNAGGTGGGEGGGRADGYYGSSGYGSGSGTGVGSSASMNG 147
>08_02_0105 +
12448808-12449152,12449218-12449409,12449520-12449685,
12449771-12450201
Length = 377
Score = 26.2 bits (55), Expect = 6.7
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 85 GSTGLGTDTGYNFGSSSATAGGPVPL 110
GSTG GY S+SA AG V L
Sbjct: 35 GSTGAAVSIGYGGASASAGAGAGVSL 60
>03_05_0245 - 22313143-22313427
Length = 94
Score = 26.2 bits (55), Expect = 6.7
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 74 VADGRRMEISMGSTGLGTDTGYNFGSSSATAGGPVPLRS 112
VA RRM + + +G D ++ G S GP P RS
Sbjct: 37 VATARRMRVRT-TQAVGLDENHSGGGSGCRGRGPQPRRS 74
>03_03_0181 +
15162681-15162806,15164026-15164172,15164269-15164355,
15165659-15165793,15165883-15165987,15166079-15166170,
15166259-15166364,15166463-15166549,15166653-15167084
Length = 438
Score = 26.2 bits (55), Expect = 6.7
Identities = 20/70 (28%), Positives = 25/70 (35%), Gaps = 1/70 (1%)
Query: 14 MEHCKGHMATHRDCMDHKAGRTSRMGQMSYTARSMYTKRTRRMGRTVAGRGRTVAGTDYA 73
M KGH+ H GR G T R + R + GR V G Y+
Sbjct: 297 MARLKGHLDYSFSSAWHPDGRVVATGNQDRTCRVWDVRNMSRSVAVLEGRIGAVRGLRYS 356
Query: 74 VADGRRMEIS 83
DGR + S
Sbjct: 357 -PDGRFLAAS 365
>11_02_0074 + 8025319-8025340,8025510-8025726,8026066-8026345
Length = 172
Score = 25.8 bits (54), Expect = 8.8
Identities = 16/49 (32%), Positives = 20/49 (40%)
Query: 57 GRTVAGRGRTVAGTDYAVADGRRMEISMGSTGLGTDTGYNFGSSSATAG 105
G + G G TVAG+ G M G TG +D G A +G
Sbjct: 108 GGAMPGVGATVAGSSGVEVTGGGMGSEGGGTGSASDGMMVTGGEEAASG 156
>11_01_0170 -
1373986-1374013,1374061-1374326,1374693-1374926,
1375034-1375171,1375255-1375557,1376008-1376172,
1376469-1376933
Length = 532
Score = 25.8 bits (54), Expect = 8.8
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 55 RMGRTVAGRGRTVAGT-DYAVADGRRMEISMGSTGLGTDTGYNFGSSSATAG 105
R G RGR VA A GR +S+ G G D+ ++G+ G
Sbjct: 84 RGGEARRERGREVARNGSCAGGSGRARSVSLAPRGRGADSSPSWGNGDGGGG 135
>08_02_0292 - 15420378-15421229
Length = 283
Score = 25.8 bits (54), Expect = 8.8
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 52 RTRRMGRTVAGRGRTVAGTDYAVADGRRMEISMGSTG 88
RT RMG AGR G+ A GRR E++ G
Sbjct: 6 RTVRMGDGGAGRRERRRGSAAAEPSGRRRELTTSGGG 42
>07_03_1369 + 26087947-26088039,26088396-26089073
Length = 256
Score = 25.8 bits (54), Expect = 8.8
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 31 KAGRTSRMGQMSYTARSMYTKRTRRMGRTVAGRGRTVAGTDYAVADGRRMEISMGSTG 88
K G S MGQ Y A ++ K+ + +AG G V D + + G + +TG
Sbjct: 149 KHGTCSGMGQHGYFAAALELKKRHDLAAVLAGAG-IVPSDDESYSLGSIRDAIAAATG 205
>05_03_0506 - 14801920-14802219
Length = 99
Score = 25.8 bits (54), Expect = 8.8
Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
Query: 33 GRTSRMGQMSYTARSMYTKRTRRMGRTVAGRGRTVAGTDYAVADGRRMEISMGSTGLGTD 92
GR+S A + +R + R VA +AV DG + ++G G G
Sbjct: 16 GRSSWRSTARGAATKLVVRRQGELRRLGPRAADLVARKSWAVGDGEGTDPAVGGEGEGGR 75
Query: 93 TGY-NFGSSSATAG 105
G FGS G
Sbjct: 76 GGRGGFGSGERRGG 89
>01_07_0294 +
42571700-42573373,42573653-42573720,42573785-42573819,
42573988-42574061,42574491-42574726,42574958-42575044,
42575356-42575455,42575584-42576003
Length = 897
Score = 25.8 bits (54), Expect = 8.8
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 60 VAGRGRTVAGTDYAVADGRRMEISMGSTGLGTDTGYNFGSSSATAG 105
VAGRG+ +AGT R +EI TG G+ + A AG
Sbjct: 171 VAGRGKQMAGT------SRSLEIIAVDTGAGSSKNASPAGGHANAG 210
>01_01_0667 + 5099026-5099188,5099262-5099661,5099748-5100648
Length = 487
Score = 25.8 bits (54), Expect = 8.8
Identities = 18/79 (22%), Positives = 31/79 (39%)
Query: 34 RTSRMGQMSYTARSMYTKRTRRMGRTVAGRGRTVAGTDYAVADGRRMEISMGSTGLGTDT 93
R + Q + + ++ ++ +AG G A A D + S +G
Sbjct: 256 REQQQQQQQFAPSWLTAQQQQQQLEAMAGAGNPAAMYGSARLDQEFIGSSTPESGGAQQA 315
Query: 94 GYNFGSSSATAGGPVPLRS 112
G +FG SS ++ P P S
Sbjct: 316 GLSFGFSSTSSAPPHPAAS 334
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.132 0.397
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,438,126
Number of Sequences: 37544
Number of extensions: 126067
Number of successful extensions: 433
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 419
Number of HSP's gapped (non-prelim): 27
length of query: 117
length of database: 14,793,348
effective HSP length: 73
effective length of query: 44
effective length of database: 12,052,636
effective search space: 530315984
effective search space used: 530315984
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)
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