Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001702-TA|BGIBMGA001702-PA|undefined
(117 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51134| Best HMM Match : Fibrinogen_C (HMM E-Value=3.1e-09) 32 0.10
SB_32076| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 30 0.42
SB_50164| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.56
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 29 0.74
SB_40166| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.98
SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.7
SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28) 28 2.3
SB_39769| Best HMM Match : DUF1641 (HMM E-Value=7.1) 27 3.0
SB_15549| Best HMM Match : ADH_zinc_N (HMM E-Value=9.4e-13) 27 3.0
SB_33873| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.9
SB_14567| Best HMM Match : MFS_1 (HMM E-Value=1.1) 27 3.9
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 27 5.2
SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8) 26 6.9
SB_6589| Best HMM Match : zf-C2H2 (HMM E-Value=1.2e-36) 26 6.9
SB_52135| Best HMM Match : RCSD (HMM E-Value=4.8) 26 9.1
SB_34108| Best HMM Match : DUF714 (HMM E-Value=0.0053) 26 9.1
>SB_51134| Best HMM Match : Fibrinogen_C (HMM E-Value=3.1e-09)
Length = 382
Score = 32.3 bits (70), Expect = 0.10
Identities = 18/52 (34%), Positives = 26/52 (50%)
Query: 45 ARSMYTKRTRRMGRTVAGRGRTVAGTDYAVADGRRMEISMGSTGLGTDTGYN 96
ARS+ +R RMGR+ G+ RT+ DG R+ + G G+ G N
Sbjct: 314 ARSIEFQRVHRMGRSFNGKPRTLLARFLRYEDGERVVSTRRQFGEGSAYGIN 365
>SB_32076| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 2352
Score = 30.3 bits (65), Expect = 0.42
Identities = 18/70 (25%), Positives = 29/70 (41%)
Query: 36 SRMGQMSYTARSMYTKRTRRMGRTVAGRGRTVAGTDYAVADGRRMEISMGSTGLGTDTGY 95
SR+ + + R T ++ GR GR + G+ VA G+ + + G
Sbjct: 624 SRLAEGGFNLRKWQTNDSKLRGRVDVSEGRCMPGSQEGVARGKTSQGVASDCDIQKVLGL 683
Query: 96 NFGSSSATAG 105
+ SSS T G
Sbjct: 684 PWNSSSDTIG 693
>SB_50164| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1780
Score = 29.9 bits (64), Expect = 0.56
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 6 LCTGRMDRMEHCKGHMATHRD 26
+C+ R +H GHM THRD
Sbjct: 529 ICSKGFKRQDHLNGHMVTHRD 549
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 29.5 bits (63), Expect = 0.74
Identities = 24/64 (37%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 45 ARSMYTKRTR-RMGRTVAGRGRTVAGTDYAVADGRRMEISMGS-TGLGTDTGYNFGSSSA 102
AR+ KR R R T A R+ DY +D R + S G G +GY GSSS
Sbjct: 423 ARNFGKKRDRFRRDNTYARDLRSNPKPDYNRSDSRSSYNNSSSMNGYGGGSGYGGGSSSR 482
Query: 103 TAGG 106
GG
Sbjct: 483 GGGG 486
>SB_40166| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 932
Score = 29.1 bits (62), Expect = 0.98
Identities = 18/70 (25%), Positives = 28/70 (40%)
Query: 36 SRMGQMSYTARSMYTKRTRRMGRTVAGRGRTVAGTDYAVADGRRMEISMGSTGLGTDTGY 95
SR+ + + R T + G G GR + G+ VA G+ + + G
Sbjct: 483 SRLAEGGFNLRKWQTNDSELRGSLDVGEGRCMPGSQEGVARGKTSQGVASDCDIQKVLGL 542
Query: 96 NFGSSSATAG 105
+ SSS T G
Sbjct: 543 PWNSSSDTIG 552
>SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2202
Score = 28.3 bits (60), Expect = 1.7
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 50 TKRTRRMGRTVAGRGRTVAGTDYAVAD-GRRMEISMGSTGLGTDT-GYNFGSSSATAG 105
T + G T G G T +GT + + G S G+TG GT T G N GS + T G
Sbjct: 527 TTSSGESGTTSTG-GNTGSGTTSSGGNTGSGTTSSGGNTGSGTTTGGVNTGSGTTTGG 583
>SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)
Length = 440
Score = 27.9 bits (59), Expect = 2.3
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 37 RMGQMSYTARSMYTKRTRRMGRTVAGRGRTV 67
R G YTA YT RTR+MG V R +
Sbjct: 75 RNGVGGYTAAGGYTARTRQMGPPVRSEFRVI 105
>SB_39769| Best HMM Match : DUF1641 (HMM E-Value=7.1)
Length = 66
Score = 27.5 bits (58), Expect = 3.0
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 45 ARSMYTKRTRRMGRTVAGRGRTVAG 69
A+SM T + R++G+ VA GR V G
Sbjct: 8 AKSMQTDQGRKIGQAVAQTGRAVGG 32
>SB_15549| Best HMM Match : ADH_zinc_N (HMM E-Value=9.4e-13)
Length = 562
Score = 27.5 bits (58), Expect = 3.0
Identities = 14/55 (25%), Positives = 23/55 (41%)
Query: 9 GRMDRMEHCKGHMATHRDCMDHKAGRTSRMGQMSYTARSMYTKRTRRMGRTVAGR 63
G + HC + ++C + A R G++ AR T+R R G+ R
Sbjct: 413 GMIKLKRHCMLFLPMEQNCCNSSAKSADRNGRVIVRARRAVTRRGRGRGKRKKSR 467
>SB_33873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1362
Score = 27.1 bits (57), Expect = 3.9
Identities = 17/70 (24%), Positives = 28/70 (40%)
Query: 36 SRMGQMSYTARSMYTKRTRRMGRTVAGRGRTVAGTDYAVADGRRMEISMGSTGLGTDTGY 95
SR+ + + R T + G GR + G+ +VA G+ + + G
Sbjct: 873 SRLAEGGFNLRKWQTNDSELRGSLDVSEGRCMPGSQESVARGKTSQGVASDCDIQKVLGL 932
Query: 96 NFGSSSATAG 105
+ SSS T G
Sbjct: 933 PWNSSSDTIG 942
>SB_14567| Best HMM Match : MFS_1 (HMM E-Value=1.1)
Length = 600
Score = 27.1 bits (57), Expect = 3.9
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 23 THRDCMDHKAGRTSRMGQMSYTARSMYTKRTR 54
THR H GRTS G + Y +RTR
Sbjct: 484 THRHFAKHDIGRTSIYGNPRFRRHIGYPRRTR 515
>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 6725
Score = 26.6 bits (56), Expect = 5.2
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 9/68 (13%)
Query: 16 HCKGHMATHRDCMDHKAGRTSRMGQMSYTARSMYTK-RTRRMGRTVAGRGRTVAGTDYAV 74
HCK H+ + DC D R G S R + + + RR+ T GRG +
Sbjct: 797 HCK-HLDPNADCED-------RCGPGSSNLRPILSPCQRRRLLGTALGRGNVEGYIPHCK 848
Query: 75 ADGRRMEI 82
+DGR E+
Sbjct: 849 SDGRYEEV 856
>SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)
Length = 1365
Score = 26.2 bits (55), Expect = 6.9
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 8 TGRMDRMEHCKGHMATHRDCM---DHKAGRTSRMGQMSYTARSMYTKRTRRMGRTVAGRG 64
T M H +G + D D+ G+T GQ++ R+ Y RT T G
Sbjct: 168 TATMTGQTHGQGQLLDRTDTWTWTDNTTGQTPGQGQITRPDRNSYYDRTDTWTGTATTNG 227
Query: 65 RTV 67
+T+
Sbjct: 228 QTL 230
>SB_6589| Best HMM Match : zf-C2H2 (HMM E-Value=1.2e-36)
Length = 651
Score = 26.2 bits (55), Expect = 6.9
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 3 HK-ELCTGRMDRMEHCKGHMATHRDCMDHKAGRTSR-MGQMSYTARSMYTKRTRRMGR-T 59
HK + C ++ H K HM TH D +K + Q S ++ +R +
Sbjct: 553 HKCKKCGRAFKQLTHLKYHMRTHSDVRMYKCPYCDKGFNQKSNLQAHIFGHTGQRPHKCD 612
Query: 60 VAGRGRTVAGT 70
V G+G T+A T
Sbjct: 613 VCGKGFTLAST 623
>SB_52135| Best HMM Match : RCSD (HMM E-Value=4.8)
Length = 476
Score = 25.8 bits (54), Expect = 9.1
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 2 GHKELCTGRMDRMEHCKGHMATHRDCMDHKAGRTSRMGQMSY 43
GH + TG D++ H+ H DH GR+ + SY
Sbjct: 349 GHSDHVTGHSDQVTGHSDHVTDHN---DHVTGRSDHVTGHSY 387
>SB_34108| Best HMM Match : DUF714 (HMM E-Value=0.0053)
Length = 455
Score = 25.8 bits (54), Expect = 9.1
Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 9 GRMDRMEHCKGHMATHRDCMDHKAGRTSRMGQMSYTARSMYTKRTRRMGRTVAGRGRTVA 68
GR H T + GRT+ G+ + R+ RT GRT R T+
Sbjct: 263 GRTTTEGHTTNEGRTTTEGRTTAEGRTTTEGRTTNEGRTTNEGRTTTEGRTTTERRPTIE 322
Query: 69 GTDYAVADGRR 79
G +GR+
Sbjct: 323 GR--TTTEGRK 331
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.321 0.132 0.397
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,639,407
Number of Sequences: 59808
Number of extensions: 128296
Number of successful extensions: 338
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 313
Number of HSP's gapped (non-prelim): 31
length of query: 117
length of database: 16,821,457
effective HSP length: 73
effective length of query: 44
effective length of database: 12,455,473
effective search space: 548040812
effective search space used: 548040812
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)
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