GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001702-TA|BGIBMGA001702-PA|undefined
         (117 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-10|CAD27761.1| 1197|Anopheles gambiae putative FGF-sign...    24   1.6  
AY170874-1|AAO34131.1| 1221|Anopheles gambiae alkali metal ion/p...    23   2.1  
AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA topoi...    22   6.6  
AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific tran...    21   8.7  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         21   8.7  
AF283268-1|AAG15373.1|   46|Anopheles gambiae ribosomal protein ...    21   8.7  

>AJ439060-10|CAD27761.1| 1197|Anopheles gambiae putative FGF-signaling
            promoter protein.
          Length = 1197

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 59   TVAGRGRTVAGTDYAVADGRRMEISMGSTGLGTDTGYNFGSSSATAGGPV 108
            ++AG G +  G  YAV   + + +SM S G       + G  S+  G PV
Sbjct: 976  SMAGGGGSNGG--YAVVRPQSLSLSMNSMGSDNSEQSSGGRLSSGGGPPV 1023


>AY170874-1|AAO34131.1| 1221|Anopheles gambiae alkali metal
           ion/proton exchanger 3 protein.
          Length = 1221

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)

Query: 23  THRDCMDHKAGRTSRMGQMSYT 44
           T RD MD+     S +GQMS T
Sbjct: 727 TMRDAMDYMRRNPSTIGQMSGT 748


>AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA
           topoisomerase protein.
          Length = 1039

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 15/45 (33%), Positives = 16/45 (35%)

Query: 64  GRTVAGTDYAVADGRRMEISMGSTGLGTDTGYNFGSSSATAGGPV 108
           G T  G +     G       G  G GT TG    SSS     PV
Sbjct: 179 GTTNGGGELTTGGGTNGCTKAGGGGGGTGTGGGLVSSSEKNYNPV 223


>AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific
           transcription factor FRU-MA protein.
          Length = 960

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 85  GSTGLGTDTGYNFGSSSATAGG 106
           G+ G G+  G   GSS  + GG
Sbjct: 674 GAVGGGSGAGGGAGSSGGSGGG 695


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 2/38 (5%)

Query: 69   GTDYAVADGRRMEISMGSTGLGT--DTGYNFGSSSATA 104
            G    + DGRR+ +++   G GT    G N+  +  TA
Sbjct: 2202 GKPEKLTDGRRVRVTVEVFGKGTFRGIGRNYRIAKCTA 2239


>AF283268-1|AAG15373.1|   46|Anopheles gambiae ribosomal protein
          S18 protein.
          Length = 46

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)

Query: 46 RSMYTKRTRRMGRTV 60
          R  +TK T R GRTV
Sbjct: 26 RGQHTKTTGRRGRTV 40


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.321    0.132    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,401
Number of Sequences: 2123
Number of extensions: 3768
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 6
length of query: 117
length of database: 516,269
effective HSP length: 56
effective length of query: 61
effective length of database: 397,381
effective search space: 24240241
effective search space used: 24240241
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 43 (21.4 bits)