Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001702-TA|BGIBMGA001702-PA|undefined
(117 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ... 29 0.64
AF003385-2|AAB54249.1| 773|Caenorhabditis elegans Hypothetical ... 27 2.6
Z75955-7|CAB00120.1| 451|Caenorhabditis elegans Hypothetical pr... 27 3.4
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 27 4.5
Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical pr... 26 6.0
U00058-2|AAL02528.2| 832|Caenorhabditis elegans Hypothetical pr... 26 6.0
Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical p... 26 7.9
Z49968-12|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical p... 26 7.9
AL033509-1|CAA22059.1| 1494|Caenorhabditis elegans Hypothetical ... 26 7.9
AF003144-4|AAB54197.2| 164|Caenorhabditis elegans Hypothetical ... 26 7.9
>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
protein H02F09.3 protein.
Length = 1275
Score = 29.5 bits (63), Expect = 0.64
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 50 TKRTRRMGRTVAGR-GRTVAGTDYAVADGRRMEISMGSTGLGTDTGYNFGSSSAT 103
T+ T + TV+G G TV G + G S GSTG T+ G SSA+
Sbjct: 1006 TESTPTVPSTVSGSTGSTVTGE--STVSGSTASTSSGSTGSSTEAGSTVSGSSAS 1058
>AF003385-2|AAB54249.1| 773|Caenorhabditis elegans Hypothetical
protein R08F11.7 protein.
Length = 773
Score = 27.5 bits (58), Expect = 2.6
Identities = 19/51 (37%), Positives = 22/51 (43%)
Query: 57 GRTVAGRGRTVAGTDYAVADGRRMEISMGSTGLGTDTGYNFGSSSATAGGP 107
GR G GR G DGR+ S G G T Y+ S+AT GP
Sbjct: 144 GRGGGGGGRGGDGGRSGEQDGRKKRNSGEQQGGGGRTEYSPPKSNATCQGP 194
>Z75955-7|CAB00120.1| 451|Caenorhabditis elegans Hypothetical
protein R07B7.11 protein.
Length = 451
Score = 27.1 bits (57), Expect = 3.4
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 27 CMDHKAGRTSRMGQMSYTA 45
C+D+ GRT MG MS+TA
Sbjct: 15 CLDNGLGRTPPMGWMSWTA 33
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 26.6 bits (56), Expect = 4.5
Identities = 16/28 (57%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 83 SMGSTGL---GTDTGYNFGSSSATAGGP 107
S GSTGL T TG FG SSA A P
Sbjct: 55 STGSTGLFGNSTATGSMFGGSSAAAPAP 82
>Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical
protein F36H2.3 protein.
Length = 1388
Score = 26.2 bits (55), Expect = 6.0
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 39 GQMSYTARSMYTKRTRRMGRTVA---GRGRTVAGTDYAVADGRRMEISMGSTGLGTDTG 94
GQ++Y+ + Y TR G T G TV+GT + ++G+ LG+ TG
Sbjct: 922 GQITYSQGNTYDI-TRPAGTTATLTCSSGYTVSGTSVSTCTNGIFTPTLGTCTLGSSTG 979
>U00058-2|AAL02528.2| 832|Caenorhabditis elegans Hypothetical
protein W03A5.1 protein.
Length = 832
Score = 26.2 bits (55), Expect = 6.0
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 1 MGHKELCTGRMDRMEHCKGHMATHRDCMDHK 31
+GH EL R D + H++T R + HK
Sbjct: 369 LGHYELMGKRYDTLYDLVHHLSTDRSALPHK 399
>Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical
protein T05C12.10 protein.
Length = 1169
Score = 25.8 bits (54), Expect = 7.9
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 57 GRTVAGRGRTVAGTDYAVADGRRMEISMGSTGLG-TDTGYNFGSSSAT 103
G G G + +GT +V +G S GSTG G T TG + SS T
Sbjct: 878 GSGATGSGTSGSGTSESVTNGSGATES-GSTGSGTTGTGTSGTGSSGT 924
>Z49968-12|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical
protein T05C12.10 protein.
Length = 1169
Score = 25.8 bits (54), Expect = 7.9
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 57 GRTVAGRGRTVAGTDYAVADGRRMEISMGSTGLG-TDTGYNFGSSSAT 103
G G G + +GT +V +G S GSTG G T TG + SS T
Sbjct: 878 GSGATGSGTSGSGTSESVTNGSGATES-GSTGSGTTGTGTSGTGSSGT 924
>AL033509-1|CAA22059.1| 1494|Caenorhabditis elegans Hypothetical
protein Y113G7C.1 protein.
Length = 1494
Score = 25.8 bits (54), Expect = 7.9
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Query: 85 GSTGLGTDTGYNFGSSSA---TAGGPVPL 110
GS G G+D+G GS SA T+GG P+
Sbjct: 947 GSGGTGSDSGGESGSGSAAGKTSGGSSPV 975
>AF003144-4|AAB54197.2| 164|Caenorhabditis elegans Hypothetical
protein C55C2.1 protein.
Length = 164
Score = 25.8 bits (54), Expect = 7.9
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 5 ELCTGRMDRMEHCKGHMATHRDCMDHKAGRTSR-MGQMSYTARSMYTKRTRRM 56
E+C+ R + + H+ TH HK R + SY ++ +K RM
Sbjct: 111 EICSKRFADKSNLRAHIQTHSGTKPHKCPRCGKSFALKSYLSKHEESKCLPRM 163
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.321 0.132 0.397
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,533,633
Number of Sequences: 27539
Number of extensions: 82316
Number of successful extensions: 296
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 288
Number of HSP's gapped (non-prelim): 15
length of query: 117
length of database: 12,573,161
effective HSP length: 72
effective length of query: 45
effective length of database: 10,590,353
effective search space: 476565885
effective search space used: 476565885
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)
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