Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001702-TA|BGIBMGA001702-PA|undefined
(117 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 29 1.1
At3g16460.2 68416.m02097 jacalin lectin family protein contains ... 28 1.8
At3g16460.1 68416.m02098 jacalin lectin family protein contains ... 28 1.8
At4g38970.2 68417.m05522 fructose-bisphosphate aldolase, putativ... 27 2.4
At4g38970.1 68417.m05521 fructose-bisphosphate aldolase, putativ... 27 2.4
At4g26420.1 68417.m03802 S-adenosyl-L-methionine:carboxyl methyl... 27 2.4
At4g15520.1 68417.m02371 tRNA/rRNA methyltransferase (SpoU) fami... 27 2.4
At4g02425.1 68417.m00328 expressed protein 27 2.4
At1g62240.1 68414.m07021 expressed protein 27 3.2
At1g66260.1 68414.m07522 RNA and export factor-binding protein, ... 27 4.3
At4g01985.1 68417.m00265 expressed protein 26 5.6
At3g43583.1 68416.m04636 hypothetical protein 26 7.5
At1g14850.1 68414.m01776 non-repetitive/WGA-negative nucleoporin... 26 7.5
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 25 9.9
At1g52360.1 68414.m05909 coatomer protein complex, subunit beta ... 25 9.9
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 28.7 bits (61), Expect = 1.1
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 21 MATHRDCMDHKAGRTSRMGQMSYTARSMYTKRTRRM-GRTV-----AGRGRTVAGTDYAV 74
+A D H+ GRT R G A ++ T+R R G V AG+ TD A+
Sbjct: 550 IAKDMDMHVHRIGRTGRAGDRDGVAYTLVTQREARFAGELVNSLVAAGQNVPPELTDLAM 609
Query: 75 ADGR 78
DGR
Sbjct: 610 KDGR 613
>At3g16460.2 68416.m02097 jacalin lectin family protein contains
Pfam profile: PF01419 jacalin-like lectin domain;
similar to myrosinase binding protein [Brassica napus]
GI:1711296, GI:1655824, myrosinase-binding protein
homolog [Arabidopsis thaliana] GI:2997767; contains Pfam
profile PF01419 jacalin-like lectin family
Length = 647
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/45 (33%), Positives = 16/45 (35%)
Query: 62 GRGRTVAGTDYAVADGRRMEISMGSTGLGTDTGYNFGSSSATAGG 106
G G GT G G TG GT TG G+ A G
Sbjct: 215 GTGTGTGGTGTGTGTGTGTGTGTGGTGTGTGTGTGSGAQKLEAQG 259
Score = 27.5 bits (58), Expect = 2.4
Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 59 TVAGRGRTVAGTDYAVADGRRMEISMGSTGLGTDTGYNFGSSSATAGG 106
T G G T GT G G TG GT TG G+ + T G
Sbjct: 162 TGTGTGGTGTGTGTGTG-GTGTGTGTGGTGTGTGTGTGTGTGTGTGTG 208
>At3g16460.1 68416.m02098 jacalin lectin family protein contains
Pfam profile: PF01419 jacalin-like lectin domain;
similar to myrosinase binding protein [Brassica napus]
GI:1711296, GI:1655824, myrosinase-binding protein
homolog [Arabidopsis thaliana] GI:2997767; contains Pfam
profile PF01419 jacalin-like lectin family
Length = 705
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/45 (33%), Positives = 16/45 (35%)
Query: 62 GRGRTVAGTDYAVADGRRMEISMGSTGLGTDTGYNFGSSSATAGG 106
G G GT G G TG GT TG G+ A G
Sbjct: 215 GTGTGTGGTGTGTGTGTGTGTGTGGTGTGTGTGTGSGAQKLEAQG 259
Score = 27.5 bits (58), Expect = 2.4
Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 59 TVAGRGRTVAGTDYAVADGRRMEISMGSTGLGTDTGYNFGSSSATAGG 106
T G G T GT G G TG GT TG G+ + T G
Sbjct: 162 TGTGTGGTGTGTGTGTG-GTGTGTGTGGTGTGTGTGTGTGTGTGTGTG 208
>At4g38970.2 68417.m05522 fructose-bisphosphate aldolase, putative
strong similarity to plastidic fructose-bisphosphate
aldolase (EC 4.1.2.13) from Nicotiana paniculata
(NPALDP1) [GI:4827251], Oryza sativa, PIR2:T02057
[SP|Q40677]
Length = 381
Score = 27.5 bits (58), Expect = 2.4
Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 11 MDRMEHCKGHMATHRDCMDHKAGRTSRMGQMSYTARSMYTKRTRRMGRTVAGRGRTVAGT 70
+D+ E KG R +R ++ A S Y + +T+A GR +
Sbjct: 13 LDKSEWVKGQSVLFRQPSSASVVLRNRATSLTVRAASSYADELVKTAKTIASPGRGILAM 72
Query: 71 DYAVAD-GRRME 81
D + A G+R++
Sbjct: 73 DESNATCGKRLD 84
>At4g38970.1 68417.m05521 fructose-bisphosphate aldolase, putative
strong similarity to plastidic fructose-bisphosphate
aldolase (EC 4.1.2.13) from Nicotiana paniculata
(NPALDP1) [GI:4827251], Oryza sativa, PIR2:T02057
[SP|Q40677]
Length = 398
Score = 27.5 bits (58), Expect = 2.4
Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 11 MDRMEHCKGHMATHRDCMDHKAGRTSRMGQMSYTARSMYTKRTRRMGRTVAGRGRTVAGT 70
+D+ E KG R +R ++ A S Y + +T+A GR +
Sbjct: 13 LDKSEWVKGQSVLFRQPSSASVVLRNRATSLTVRAASSYADELVKTAKTIASPGRGILAM 72
Query: 71 DYAVAD-GRRME 81
D + A G+R++
Sbjct: 73 DESNATCGKRLD 84
>At4g26420.1 68417.m03802 S-adenosyl-L-methionine:carboxyl
methyltransferase family protein similar to caffeine
synthase [Camellia sinensis][GI:9967143],
defense-related protein cjs1 [Brassica
carinata][GI:14009292],
S-adenosyl-L-methionine:salicylic acid carboxyl
methyltransferase [Clarkia breweri][GI:6002712]
Length = 619
Score = 27.5 bits (58), Expect = 2.4
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 20 HMATHRDCMDHKAGRTSRMGQMSYTARS-MYTKRTRRMGRTVAG 62
H+ T D M + GR S G + RS + T+R+ RTVAG
Sbjct: 485 HLGTSAD-MTIQGGRRSHCGDQRTSKRSSQMSLETKRLPRTVAG 527
>At4g15520.1 68417.m02371 tRNA/rRNA methyltransferase (SpoU) family
protein similar to SP|P19396 tRNA
(Guanosine-2'-O-)-methyltransferase (EC 2.1.1.34)
{Escherichia coli O157:H7}; contains Pfam profile
PF00588: SpoU rRNA Methylase (RNA methyltransferase,
TrmH) family; contains non_consensus donor splice site
TA at exon 4
Length = 222
Score = 27.5 bits (58), Expect = 2.4
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 62 GRGRTVAGTDYAVADGRRMEISMGSTGLGTDTGYNFGSSSA 102
GR AGT+ +V + R++ G D G GSSS+
Sbjct: 172 GRRNFCAGTEESVIEERKLRKESAENGFFDDNGNENGSSSS 212
>At4g02425.1 68417.m00328 expressed protein
Length = 262
Score = 27.5 bits (58), Expect = 2.4
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 29 DHKAGRTSRMGQMSYTA--RSMYTKRTRRMGRTVAGRGRTVAGTDYAVADGRRMEISMGS 86
D G+T S R + KR RR R+V+GR +GT + G S
Sbjct: 74 DDNGGKTLSASNYSNRGSFRLVARKRRRRNSRSVSGRSSDRSGTRRCCSIGAHGTCSDLP 133
Query: 87 TGLGTD-TGYNFGSSS 101
+GTD +G FG ++
Sbjct: 134 FAVGTDSSGELFGEAN 149
>At1g62240.1 68414.m07021 expressed protein
Length = 227
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 85 GSTGLGTDTGYNFGSSSATAGGP 107
GS+G G+ +G GS + TA GP
Sbjct: 161 GSSGSGSGSGSGSGSGTGTASGP 183
>At1g66260.1 68414.m07522 RNA and export factor-binding protein,
putative similar to GI:7159943 from [Mus musculus] (RNA
6 (4), 638-650 (2000))
Length = 295
Score = 26.6 bits (56), Expect = 4.3
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 3/82 (3%)
Query: 32 AGRTSRMGQMSYTARSMYTKRTRRMGRTVAGRGRTVAGTDYAVADGRRMEISMGSTGL-- 89
A R + G RS++ + R GR GRG +G + ++ ++ G G
Sbjct: 192 AARVNVTGLNGRMKRSVFIGQGVRGGRVGRGRGSGPSGRRLPLQQNQQGGVTAGRGGFRG 251
Query: 90 -GTDTGYNFGSSSATAGGPVPL 110
G G G+ S GG P+
Sbjct: 252 RGRGNGGGRGNKSGGRGGKKPV 273
>At4g01985.1 68417.m00265 expressed protein
Length = 579
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 67 VAGTDYAVADGRRMEISMGSTGLGTDTGYNFGSSSATAGG 106
++GT + +A RR + GS G+G G GG
Sbjct: 27 LSGTGHDIARSRRHKHGRGSVGVGAGAGGGASGGIGVGGG 66
>At3g43583.1 68416.m04636 hypothetical protein
Length = 100
Score = 25.8 bits (54), Expect = 7.5
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 7 CTG-RMDRMEHCKGHMATHRDCMDHKAGRTSRMGQMSYTARS 47
C G R HC H + HR +H AG T+ G S RS
Sbjct: 59 CQGFHCHRSFHC--HRSNHRRRSNHAAGATTVAGVTSVAIRS 98
>At1g14850.1 68414.m01776 non-repetitive/WGA-negative nucleoporin
family protein contains Pfam profile: PF03177
non-repetitive/WGA-negative nucleoporin
Length = 1464
Score = 25.8 bits (54), Expect = 7.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 73 AVADGRRMEISMGSTGLGTDTGYN 96
A++DGRRM +S S+G G+ ++
Sbjct: 341 ALSDGRRMYLSTSSSGSGSTISFS 364
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 25.4 bits (53), Expect = 9.9
Identities = 22/100 (22%), Positives = 33/100 (33%), Gaps = 6/100 (6%)
Query: 19 GHMATHRDCMDHKAGRTSRMGQMSYTARSMYT------KRTRRMGRTVAGRGRTVAGTDY 72
G + H+ DH GR+ G ++Y + M R G V + +
Sbjct: 154 GELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPKKPNS 213
Query: 73 AVADGRRMEISMGSTGLGTDTGYNFGSSSATAGGPVPLRS 112
+R S + G G GY G G P +S
Sbjct: 214 VTTPSKRFGDSRSNFGGGYGDGYGGGHGGGYGGPGGPYKS 253
>At1g52360.1 68414.m05909 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to (SP:O55029) Coatomer
beta' subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:O55029) [Mus musculus]; similar to GI:298096 from
[Homo sapiens]
Length = 926
Score = 25.4 bits (53), Expect = 9.9
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 5/58 (8%)
Query: 31 KAGRTSRMGQMSYTARSMYTKRTRRMGRTVAGRGRTVAGTDYAVADGRRMEISMGSTG 88
K GR + M T + ++ K + G DY V DG R+ +S+ G
Sbjct: 298 KLGREIPVASMDNTGKIIWAKHNEIQTANIKS-----IGADYEVTDGERLPLSVKELG 350
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.321 0.132 0.397
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,524,901
Number of Sequences: 28952
Number of extensions: 83919
Number of successful extensions: 253
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 217
Number of HSP's gapped (non-prelim): 38
length of query: 117
length of database: 12,070,560
effective HSP length: 72
effective length of query: 45
effective length of database: 9,986,016
effective search space: 449370720
effective search space used: 449370720
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)
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