GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001701-TA|BGIBMGA001701-PA|undefined
         (210 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    23   2.4  
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    22   4.1  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 3/26 (11%)

Query: 56  GNMLPMLPFPTIGAGLGY---QMPYP 78
           G  L  +P P +G GLG+    +P+P
Sbjct: 88  GGGLSGMPMPALGFGLGHPLESVPFP 113


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 10/29 (34%), Positives = 12/29 (41%)

Query: 114 GLSGFAGLPSIPMPALSNLSVPAVNSVCE 142
           GL+     P  P P   NL     N +CE
Sbjct: 271 GLNDATAAPGEPGPYTVNLGSLGYNEICE 299


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.140    0.450 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,444
Number of Sequences: 317
Number of extensions: 3168
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 210
length of database: 114,650
effective HSP length: 54
effective length of query: 156
effective length of database: 97,532
effective search space: 15214992
effective search space used: 15214992
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 41 (20.6 bits)