Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001701-TA|BGIBMGA001701-PA|undefined
(210 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.094
SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase... 30 0.22
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 28 1.2
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb... 27 1.5
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 27 2.0
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos... 27 2.7
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 27 2.7
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 26 3.5
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 26 4.7
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 25 6.2
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 25 8.2
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.5 bits (68), Expect = 0.094
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 98 VSNGHTPLGYAGVGFPGLSGFAGLPSIPMPALSNLSVPAVNSVCETIPNIASRALPV 154
V +G P+ V P + +G P +P P+++ VPA +S +P A+ PV
Sbjct: 1135 VPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPV 1191
Score = 26.2 bits (55), Expect = 3.5
Identities = 36/143 (25%), Positives = 57/143 (39%), Gaps = 13/143 (9%)
Query: 28 STPNYALSSQLYPGLIPPSTTSVCETSPGNMLPMLPFPT----IGAGLGYQMPYPFGVGL 83
STP SS P PP +P + +P +P P+ + A G P P
Sbjct: 1048 STPPVPKSSSGAPSAPPPVP------APSSEIPSIPAPSGAPPVPAPSGIP-PVPKPSVA 1100
Query: 84 GFTMGQPGSTVCETVS-NGHTPLGYAGVGFPGLSGFAGLPSIPMPALSNLSVPAVNSVCE 142
+ +P V + +G P+ V P + +G P +P P+++ VPA S
Sbjct: 1101 APPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPA-PSGAP 1159
Query: 143 TIPNIASRALPVGGSTTVCENVP 165
+P + A PV ++ VP
Sbjct: 1160 PVPKPSVAAPPVPAPSSGIPPVP 1182
>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 112
Score = 30.3 bits (65), Expect = 0.22
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 20 LGQTTVCESTPNYALSSQLYPGLIPPSTT 48
LG+ TP+Y + +PGLIPP++T
Sbjct: 69 LGEKAKLTITPDYGYGPRGFPGLIPPNST 97
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 27.9 bits (59), Expect = 1.2
Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 12/123 (9%)
Query: 31 NYALSSQLYPGLIPPSTTSVCETSPGNMLPMLPFPTIGAGLGYQMPYPFGVGLGFTMGQP 90
N L S+L + PST+S+ G P LP+ + L P V FT G
Sbjct: 448 NSGLPSRLTEPISSPSTSSIDVDKEGTSFPGLPYHSSKGNLYAPQP-SSNVPTKFTGG-- 504
Query: 91 GSTVCETVSNGHTPLGYAGVGFPGLSGFAGLPSIPMPALSNLSVPAVNSVCETIPNIASR 150
E+ S P+ A + G A +I + AL L P + ++ P+ S
Sbjct: 505 ---ASESSSVPPRPIPSA------MKGKAPASAISIEALEELDPPKITTIDGESPSSISS 555
Query: 151 ALP 153
LP
Sbjct: 556 RLP 558
Score = 25.0 bits (52), Expect = 8.2
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 113 PGLSGFAGLPSIPMPALSNLSV-PAVNSVCET------IPNIASRALPVGGST--TVCEN 163
PG + + P+ MP+LSN+ V P ++S T IP +A+ + ST V EN
Sbjct: 361 PGFNDYVNRPTSVMPSLSNMIVSPDLDSSPSTDWNQYVIPPLATPSSRNSKSTQSAVPEN 420
Query: 164 VPNFMS 169
V F S
Sbjct: 421 VSRFDS 426
>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 27.5 bits (58), Expect = 1.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 85 FTMGQPGSTVCETVSNGHTPLGYAGV 110
FT+ QPGST+ ++S G T + G+
Sbjct: 266 FTVVQPGSTIATSLSPGETAPKHCGI 291
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 27.1 bits (57), Expect = 2.0
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 100 NGHTPLGYAGVGFPGLSGFAGLPSIPMPALSNLSVP 135
+GH AGVG S A +PS PA+SN+ P
Sbjct: 79 HGHRRSASAGVGMGNFSNQATIPS-NSPAVSNMQPP 113
>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 114 GLSGFAGLPSIPMPALSNLSVPAVNSVCETIPNIA 148
G S FA P++ MP L L+ + + + NIA
Sbjct: 83 GFSAFARSPTVTMPRLKALTTGTIPGFLDVLLNIA 117
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 26.6 bits (56), Expect = 2.7
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 11/86 (12%)
Query: 100 NGHTPLGYAGVGFPGLSGFAGLPSIPMPALSNLSVPAVNSVCETIPNIASRALPVGGSTT 159
N + Y G + + LPS +L N +PA +P + S P G+
Sbjct: 104 NNNFGYSYVGQSSQPVPSYNPLPSYNTASLPNAGIPAA------MPGMPS-GYP--GTVP 154
Query: 160 VCENVPNFMSYGLPYGYGFPIG-INP 184
+ + N Y PY G+PIG +NP
Sbjct: 155 IPQGGYN-AHYSSPYNNGYPIGAVNP 179
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 26.2 bits (55), Expect = 3.5
Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 2/85 (2%)
Query: 65 PTIGAGLGYQMPYPF-GVGLGFTMGQPGSTVCETVSNGHTPLGYAGVGFPGLSGFAGLPS 123
P I GY +P G G+ G G P G G+PG++ +P+
Sbjct: 481 PLIYGPGGYPIPAAVNGRGMPMVPGHNGPMPMYPGMPTQFPAGGPAPGYPGMNARGPVPA 540
Query: 124 IPMPALSNLSVPAVN-SVCETIPNI 147
P + SVP+ + E +P +
Sbjct: 541 QGRPMMMPGSVPSAGPAEAEAVPAV 565
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.8 bits (54), Expect = 4.7
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 113 PGL-SGFAGLPSIPMPALSNLSVPAVNSVCE--TIP-NIASRALPVGGSTTVCENVPN 166
PG+ +GF PS+ +P+ NL + + +S+ E IP NI +++L E PN
Sbjct: 139 PGIRAGFCIFPSLNIPSGENLQIKSSSSLEEINKIPENIVTQSLSYTNLLKKFETSPN 196
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 25.4 bits (53), Expect = 6.2
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Query: 90 PGSTVCETVSNGH---TPL-GYAGVGFPGLSGFAGLPSIPMPALSNLSVPAVNSVCETIP 145
P S V E + H TP G V P + + +IP + ++PA ++ + P
Sbjct: 508 PQSKVPENLKESHVNETPYRGLHDVNLPASGNASSVSAIPPQVSAQTTIPAASTSATSGP 567
Query: 146 NIASRALPVGG 156
+ ++ GG
Sbjct: 568 VVGKQSAGYGG 578
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 25.0 bits (52), Expect = 8.2
Identities = 49/172 (28%), Positives = 68/172 (39%), Gaps = 24/172 (13%)
Query: 43 IPPSTTSVCETSPGNMLPMLPFPTIGAGLGYQMPYPFGVGLGFTMGQPGSTVCETVSNGH 102
+ PS S + SP N M P+P + G G Y LG + G T + S
Sbjct: 219 LAPSIPSPMKLSPANQQAMPPYPQM-LGPGSISSYT-NSNLGPSAGFRPPTFFSSPS--- 273
Query: 103 TPLGYAGVGFPGLSGFAGLPSIPMPALSN--LSVPAVNSVCETIPNIASR----ALPVGG 156
P Y+G P L+ A P++ LSN S PAV S+ P+ LP G
Sbjct: 274 -PQPYSG---PILASTA--PTLDGSYLSNPSNSNPAVMSLSSNFPSPPKPNNPVYLPPRG 327
Query: 157 STTVCENVPNFMSYGLPYGYGFPIGINPVGGATTVCEPTVHGYGVGLPFGRS 208
+ TV + V N LP F + V + T++ Y +P G S
Sbjct: 328 NPTVNDRVSNV----LPSITSFDSSVTTVPSNSPA---TLNSYTTSVPSGMS 372
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.320 0.140 0.450
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,115,379
Number of Sequences: 5004
Number of extensions: 51105
Number of successful extensions: 131
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 118
Number of HSP's gapped (non-prelim): 19
length of query: 210
length of database: 2,362,478
effective HSP length: 70
effective length of query: 140
effective length of database: 2,012,198
effective search space: 281707720
effective search space used: 281707720
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)
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