BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001701-TA|BGIBMGA001701-PA|undefined (210 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.094 SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase... 30 0.22 SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 28 1.2 SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb... 27 1.5 SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 27 2.0 SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos... 27 2.7 SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 27 2.7 SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 26 3.5 SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 26 4.7 SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 25 6.2 SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 25 8.2 >SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual Length = 1611 Score = 31.5 bits (68), Expect = 0.094 Identities = 17/57 (29%), Positives = 28/57 (49%) Query: 98 VSNGHTPLGYAGVGFPGLSGFAGLPSIPMPALSNLSVPAVNSVCETIPNIASRALPV 154 V +G P+ V P + +G P +P P+++ VPA +S +P A+ PV Sbjct: 1135 VPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPV 1191 Score = 26.2 bits (55), Expect = 3.5 Identities = 36/143 (25%), Positives = 57/143 (39%), Gaps = 13/143 (9%) Query: 28 STPNYALSSQLYPGLIPPSTTSVCETSPGNMLPMLPFPT----IGAGLGYQMPYPFGVGL 83 STP SS P PP +P + +P +P P+ + A G P P Sbjct: 1048 STPPVPKSSSGAPSAPPPVP------APSSEIPSIPAPSGAPPVPAPSGIP-PVPKPSVA 1100 Query: 84 GFTMGQPGSTVCETVS-NGHTPLGYAGVGFPGLSGFAGLPSIPMPALSNLSVPAVNSVCE 142 + +P V + +G P+ V P + +G P +P P+++ VPA S Sbjct: 1101 APPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPA-PSGAP 1159 Query: 143 TIPNIASRALPVGGSTTVCENVP 165 +P + A PV ++ VP Sbjct: 1160 PVPKPSVAAPPVPAPSSGIPPVP 1182 >SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase Fkh1|Schizosaccharomyces pombe|chr 2|||Manual Length = 112 Score = 30.3 bits (65), Expect = 0.22 Identities = 12/29 (41%), Positives = 18/29 (62%) Query: 20 LGQTTVCESTPNYALSSQLYPGLIPPSTT 48 LG+ TP+Y + +PGLIPP++T Sbjct: 69 LGEKAKLTITPDYGYGPRGFPGLIPPNST 97 >SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 871 Score = 27.9 bits (59), Expect = 1.2 Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 12/123 (9%) Query: 31 NYALSSQLYPGLIPPSTTSVCETSPGNMLPMLPFPTIGAGLGYQMPYPFGVGLGFTMGQP 90 N L S+L + PST+S+ G P LP+ + L P V FT G Sbjct: 448 NSGLPSRLTEPISSPSTSSIDVDKEGTSFPGLPYHSSKGNLYAPQP-SSNVPTKFTGG-- 504 Query: 91 GSTVCETVSNGHTPLGYAGVGFPGLSGFAGLPSIPMPALSNLSVPAVNSVCETIPNIASR 150 E+ S P+ A + G A +I + AL L P + ++ P+ S Sbjct: 505 ---ASESSSVPPRPIPSA------MKGKAPASAISIEALEELDPPKITTIDGESPSSISS 555 Query: 151 ALP 153 LP Sbjct: 556 RLP 558 Score = 25.0 bits (52), Expect = 8.2 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 9/66 (13%) Query: 113 PGLSGFAGLPSIPMPALSNLSV-PAVNSVCET------IPNIASRALPVGGST--TVCEN 163 PG + + P+ MP+LSN+ V P ++S T IP +A+ + ST V EN Sbjct: 361 PGFNDYVNRPTSVMPSLSNMIVSPDLDSSPSTDWNQYVIPPLATPSSRNSKSTQSAVPEN 420 Query: 164 VPNFMS 169 V F S Sbjct: 421 VSRFDS 426 >SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pombe|chr 1|||Manual Length = 649 Score = 27.5 bits (58), Expect = 1.5 Identities = 11/26 (42%), Positives = 17/26 (65%) Query: 85 FTMGQPGSTVCETVSNGHTPLGYAGV 110 FT+ QPGST+ ++S G T + G+ Sbjct: 266 FTVVQPGSTIATSLSPGETAPKHCGI 291 >SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 1066 Score = 27.1 bits (57), Expect = 2.0 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%) Query: 100 NGHTPLGYAGVGFPGLSGFAGLPSIPMPALSNLSVP 135 +GH AGVG S A +PS PA+SN+ P Sbjct: 79 HGHRRSASAGVGMGNFSNQATIPS-NSPAVSNMQPP 113 >SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizosaccharomyces pombe|chr 1|||Manual Length = 758 Score = 26.6 bits (56), Expect = 2.7 Identities = 12/35 (34%), Positives = 18/35 (51%) Query: 114 GLSGFAGLPSIPMPALSNLSVPAVNSVCETIPNIA 148 G S FA P++ MP L L+ + + + NIA Sbjct: 83 GFSAFARSPTVTMPRLKALTTGTIPGFLDVLLNIA 117 >SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccharomyces pombe|chr 3|||Manual Length = 1284 Score = 26.6 bits (56), Expect = 2.7 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 11/86 (12%) Query: 100 NGHTPLGYAGVGFPGLSGFAGLPSIPMPALSNLSVPAVNSVCETIPNIASRALPVGGSTT 159 N + Y G + + LPS +L N +PA +P + S P G+ Sbjct: 104 NNNFGYSYVGQSSQPVPSYNPLPSYNTASLPNAGIPAA------MPGMPS-GYP--GTVP 154 Query: 160 VCENVPNFMSYGLPYGYGFPIG-INP 184 + + N Y PY G+PIG +NP Sbjct: 155 IPQGGYN-AHYSSPYNNGYPIGAVNP 179 >SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 653 Score = 26.2 bits (55), Expect = 3.5 Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 2/85 (2%) Query: 65 PTIGAGLGYQMPYPF-GVGLGFTMGQPGSTVCETVSNGHTPLGYAGVGFPGLSGFAGLPS 123 P I GY +P G G+ G G P G G+PG++ +P+ Sbjct: 481 PLIYGPGGYPIPAAVNGRGMPMVPGHNGPMPMYPGMPTQFPAGGPAPGYPGMNARGPVPA 540 Query: 124 IPMPALSNLSVPAVN-SVCETIPNI 147 P + SVP+ + E +P + Sbjct: 541 QGRPMMMPGSVPSAGPAEAEAVPAV 565 >SPBC530.06c |||translation initiation factor eIF3 alpha subunit |Schizosaccharomyces pombe|chr 2|||Manual Length = 1173 Score = 25.8 bits (54), Expect = 4.7 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 4/58 (6%) Query: 113 PGL-SGFAGLPSIPMPALSNLSVPAVNSVCE--TIP-NIASRALPVGGSTTVCENVPN 166 PG+ +GF PS+ +P+ NL + + +S+ E IP NI +++L E PN Sbjct: 139 PGIRAGFCIFPSLNIPSGENLQIKSSSSLEEINKIPENIVTQSLSYTNLLKKFETSPN 196 >SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pombe|chr 2|||Manual Length = 963 Score = 25.4 bits (53), Expect = 6.2 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 4/71 (5%) Query: 90 PGSTVCETVSNGH---TPL-GYAGVGFPGLSGFAGLPSIPMPALSNLSVPAVNSVCETIP 145 P S V E + H TP G V P + + +IP + ++PA ++ + P Sbjct: 508 PQSKVPENLKESHVNETPYRGLHDVNLPASGNASSVSAIPPQVSAQTTIPAASTSATSGP 567 Query: 146 NIASRALPVGG 156 + ++ GG Sbjct: 568 VVGKQSAGYGG 578 >SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr 3|||Manual Length = 867 Score = 25.0 bits (52), Expect = 8.2 Identities = 49/172 (28%), Positives = 68/172 (39%), Gaps = 24/172 (13%) Query: 43 IPPSTTSVCETSPGNMLPMLPFPTIGAGLGYQMPYPFGVGLGFTMGQPGSTVCETVSNGH 102 + PS S + SP N M P+P + G G Y LG + G T + S Sbjct: 219 LAPSIPSPMKLSPANQQAMPPYPQM-LGPGSISSYT-NSNLGPSAGFRPPTFFSSPS--- 273 Query: 103 TPLGYAGVGFPGLSGFAGLPSIPMPALSN--LSVPAVNSVCETIPNIASR----ALPVGG 156 P Y+G P L+ A P++ LSN S PAV S+ P+ LP G Sbjct: 274 -PQPYSG---PILASTA--PTLDGSYLSNPSNSNPAVMSLSSNFPSPPKPNNPVYLPPRG 327 Query: 157 STTVCENVPNFMSYGLPYGYGFPIGINPVGGATTVCEPTVHGYGVGLPFGRS 208 + TV + V N LP F + V + T++ Y +P G S Sbjct: 328 NPTVNDRVSNV----LPSITSFDSSVTTVPSNSPA---TLNSYTTSVPSGMS 372 Database: spombe Posted date: Oct 3, 2007 3:31 PM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.320 0.140 0.450 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,115,379 Number of Sequences: 5004 Number of extensions: 51105 Number of successful extensions: 131 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 118 Number of HSP's gapped (non-prelim): 19 length of query: 210 length of database: 2,362,478 effective HSP length: 70 effective length of query: 140 effective length of database: 2,012,198 effective search space: 281707720 effective search space used: 281707720 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits) S2: 52 (25.0 bits)
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