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Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001701-TA|BGIBMGA001701-PA|undefined
         (210 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.094
SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase...    30   0.22 
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    28   1.2  
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...    27   1.5  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    27   2.0  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    27   2.7  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    27   2.7  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    26   3.5  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    26   4.7  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    25   6.2  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    25   8.2  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 31.5 bits (68), Expect = 0.094
 Identities = 17/57 (29%), Positives = 28/57 (49%)

Query: 98   VSNGHTPLGYAGVGFPGLSGFAGLPSIPMPALSNLSVPAVNSVCETIPNIASRALPV 154
            V +G  P+    V  P +   +G P +P P+++   VPA +S    +P  A+   PV
Sbjct: 1135 VPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPV 1191



 Score = 26.2 bits (55), Expect = 3.5
 Identities = 36/143 (25%), Positives = 57/143 (39%), Gaps = 13/143 (9%)

Query: 28   STPNYALSSQLYPGLIPPSTTSVCETSPGNMLPMLPFPT----IGAGLGYQMPYPFGVGL 83
            STP    SS   P   PP        +P + +P +P P+    + A  G   P P     
Sbjct: 1048 STPPVPKSSSGAPSAPPPVP------APSSEIPSIPAPSGAPPVPAPSGIP-PVPKPSVA 1100

Query: 84   GFTMGQPGSTVCETVS-NGHTPLGYAGVGFPGLSGFAGLPSIPMPALSNLSVPAVNSVCE 142
               + +P   V    + +G  P+    V  P +   +G P +P P+++   VPA  S   
Sbjct: 1101 APPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPA-PSGAP 1159

Query: 143  TIPNIASRALPVGGSTTVCENVP 165
             +P  +  A PV   ++    VP
Sbjct: 1160 PVPKPSVAAPPVPAPSSGIPPVP 1182


>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
          Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 112

 Score = 30.3 bits (65), Expect = 0.22
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 20 LGQTTVCESTPNYALSSQLYPGLIPPSTT 48
          LG+      TP+Y    + +PGLIPP++T
Sbjct: 69 LGEKAKLTITPDYGYGPRGFPGLIPPNST 97


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 12/123 (9%)

Query: 31  NYALSSQLYPGLIPPSTTSVCETSPGNMLPMLPFPTIGAGLGYQMPYPFGVGLGFTMGQP 90
           N  L S+L   +  PST+S+     G   P LP+ +    L    P    V   FT G  
Sbjct: 448 NSGLPSRLTEPISSPSTSSIDVDKEGTSFPGLPYHSSKGNLYAPQP-SSNVPTKFTGG-- 504

Query: 91  GSTVCETVSNGHTPLGYAGVGFPGLSGFAGLPSIPMPALSNLSVPAVNSVCETIPNIASR 150
                E+ S    P+  A      + G A   +I + AL  L  P + ++    P+  S 
Sbjct: 505 ---ASESSSVPPRPIPSA------MKGKAPASAISIEALEELDPPKITTIDGESPSSISS 555

Query: 151 ALP 153
            LP
Sbjct: 556 RLP 558



 Score = 25.0 bits (52), Expect = 8.2
 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 9/66 (13%)

Query: 113 PGLSGFAGLPSIPMPALSNLSV-PAVNSVCET------IPNIASRALPVGGST--TVCEN 163
           PG + +   P+  MP+LSN+ V P ++S   T      IP +A+ +     ST   V EN
Sbjct: 361 PGFNDYVNRPTSVMPSLSNMIVSPDLDSSPSTDWNQYVIPPLATPSSRNSKSTQSAVPEN 420

Query: 164 VPNFMS 169
           V  F S
Sbjct: 421 VSRFDS 426


>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 85  FTMGQPGSTVCETVSNGHTPLGYAGV 110
           FT+ QPGST+  ++S G T   + G+
Sbjct: 266 FTVVQPGSTIATSLSPGETAPKHCGI 291


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 100 NGHTPLGYAGVGFPGLSGFAGLPSIPMPALSNLSVP 135
           +GH     AGVG    S  A +PS   PA+SN+  P
Sbjct: 79  HGHRRSASAGVGMGNFSNQATIPS-NSPAVSNMQPP 113


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 114 GLSGFAGLPSIPMPALSNLSVPAVNSVCETIPNIA 148
           G S FA  P++ MP L  L+   +    + + NIA
Sbjct: 83  GFSAFARSPTVTMPRLKALTTGTIPGFLDVLLNIA 117


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 11/86 (12%)

Query: 100 NGHTPLGYAGVGFPGLSGFAGLPSIPMPALSNLSVPAVNSVCETIPNIASRALPVGGSTT 159
           N +    Y G     +  +  LPS    +L N  +PA       +P + S   P  G+  
Sbjct: 104 NNNFGYSYVGQSSQPVPSYNPLPSYNTASLPNAGIPAA------MPGMPS-GYP--GTVP 154

Query: 160 VCENVPNFMSYGLPYGYGFPIG-INP 184
           + +   N   Y  PY  G+PIG +NP
Sbjct: 155 IPQGGYN-AHYSSPYNNGYPIGAVNP 179


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 2/85 (2%)

Query: 65  PTIGAGLGYQMPYPF-GVGLGFTMGQPGSTVCETVSNGHTPLGYAGVGFPGLSGFAGLPS 123
           P I    GY +P    G G+    G  G            P G    G+PG++    +P+
Sbjct: 481 PLIYGPGGYPIPAAVNGRGMPMVPGHNGPMPMYPGMPTQFPAGGPAPGYPGMNARGPVPA 540

Query: 124 IPMPALSNLSVPAVN-SVCETIPNI 147
              P +   SVP+   +  E +P +
Sbjct: 541 QGRPMMMPGSVPSAGPAEAEAVPAV 565


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 4/58 (6%)

Query: 113 PGL-SGFAGLPSIPMPALSNLSVPAVNSVCE--TIP-NIASRALPVGGSTTVCENVPN 166
           PG+ +GF   PS+ +P+  NL + + +S+ E   IP NI +++L         E  PN
Sbjct: 139 PGIRAGFCIFPSLNIPSGENLQIKSSSSLEEINKIPENIVTQSLSYTNLLKKFETSPN 196


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 4/71 (5%)

Query: 90  PGSTVCETVSNGH---TPL-GYAGVGFPGLSGFAGLPSIPMPALSNLSVPAVNSVCETIP 145
           P S V E +   H   TP  G   V  P     + + +IP    +  ++PA ++   + P
Sbjct: 508 PQSKVPENLKESHVNETPYRGLHDVNLPASGNASSVSAIPPQVSAQTTIPAASTSATSGP 567

Query: 146 NIASRALPVGG 156
            +  ++   GG
Sbjct: 568 VVGKQSAGYGG 578


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 49/172 (28%), Positives = 68/172 (39%), Gaps = 24/172 (13%)

Query: 43  IPPSTTSVCETSPGNMLPMLPFPTIGAGLGYQMPYPFGVGLGFTMGQPGSTVCETVSNGH 102
           + PS  S  + SP N   M P+P +  G G    Y     LG + G    T   + S   
Sbjct: 219 LAPSIPSPMKLSPANQQAMPPYPQM-LGPGSISSYT-NSNLGPSAGFRPPTFFSSPS--- 273

Query: 103 TPLGYAGVGFPGLSGFAGLPSIPMPALSN--LSVPAVNSVCETIPNIASR----ALPVGG 156
            P  Y+G   P L+  A  P++    LSN   S PAV S+    P+         LP  G
Sbjct: 274 -PQPYSG---PILASTA--PTLDGSYLSNPSNSNPAVMSLSSNFPSPPKPNNPVYLPPRG 327

Query: 157 STTVCENVPNFMSYGLPYGYGFPIGINPVGGATTVCEPTVHGYGVGLPFGRS 208
           + TV + V N     LP    F   +  V   +     T++ Y   +P G S
Sbjct: 328 NPTVNDRVSNV----LPSITSFDSSVTTVPSNSPA---TLNSYTTSVPSGMS 372


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.140    0.450 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,115,379
Number of Sequences: 5004
Number of extensions: 51105
Number of successful extensions: 131
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 118
Number of HSP's gapped (non-prelim): 19
length of query: 210
length of database: 2,362,478
effective HSP length: 70
effective length of query: 140
effective length of database: 2,012,198
effective search space: 281707720
effective search space used: 281707720
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)

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