Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001701-TA|BGIBMGA001701-PA|undefined
(210 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_02_0020 - 10269252-10269314,10269442-10269483,10269759-102702... 36 0.018
06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281 36 0.032
09_06_0172 + 21329904-21331512,21331595-21331740,21332333-213325... 35 0.056
01_01_0929 - 7344911-7345978 33 0.17
03_06_0188 + 32212297-32212746 31 0.52
12_01_0239 - 1793612-1793716,1793808-1793826,1794424-1794599,179... 31 0.68
01_03_0306 + 14875755-14876822 31 0.90
03_06_0187 + 32209924-32210634 30 1.6
01_06_1507 - 37838645-37839311,37839393-37839499,37839588-378396... 30 1.6
01_05_0696 - 24366857-24368200 30 1.6
04_04_1104 - 30928475-30928501,30929008-30929110,30929287-309293... 29 2.1
06_01_0835 - 6315762-6316844 29 2.8
04_01_0609 + 7966263-7966366,7967945-7968706,7972607-7972851,797... 29 2.8
03_02_0249 - 6792210-6792215,6794332-6794607,6794692-6795180,679... 29 2.8
02_05_0700 + 31018480-31019832 29 2.8
01_05_0687 + 24288648-24292746,24293737-24293844,24294333-242944... 29 3.7
09_04_0609 - 18929600-18929646,18929753-18929924,18930304-189304... 28 4.8
09_05_0009 - 20048736-20049423,20049504-20049743,20049832-20050385 27 8.4
04_03_0303 + 14108902-14109208,14109259-14109286,14110120-141105... 27 8.4
02_05_0584 - 30135768-30135790,30136104-30136866 27 8.4
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57... 27 8.4
>01_02_0020 -
10269252-10269314,10269442-10269483,10269759-10270244,
10270338-10270421,10270491-10270556,10270718-10270810,
10270901-10271987,10273338-10273362,10273881-10273899
Length = 654
Score = 36.3 bits (80), Expect = 0.018
Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 11/96 (11%)
Query: 60 PMLPFPTIGAGLGYQMPYPFGVGLGFTMGQPGSTVCETVSNGHTPLGYAGVGFPGLSGFA 119
PM FP +G GLGY G+G+ F M G+ + H P P G
Sbjct: 484 PMAHFPHLGMGLGY------GMGV-FDMSNTGALQMPPMPGAHFPCPMIPGASPQGLGIP 536
Query: 120 GLPSIPMPALSNLSVPAVNSVCETIPNIASRA-LPV 154
G ++PM + ++P S ++P AS A LPV
Sbjct: 537 GTSTMPMFGVPGQTIP---SSASSVPPFASLAGLPV 569
>06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281
Length = 518
Score = 35.5 bits (78), Expect = 0.032
Identities = 36/141 (25%), Positives = 55/141 (39%), Gaps = 7/141 (4%)
Query: 67 IGAGLGYQMPYPFGVGLGFTMG--QPGSTVCETVSNGHTPLGYA---GVGFPGLSGFAGL 121
+G+G GY +G G G + GST C +G LG + GVG G G
Sbjct: 87 LGSGYGYGSGSAYGAGNGGSASGCGSGSTSCSGSGSGSVGLGTSINVGVGVGANGGTNGG 146
Query: 122 PSIPMPALSNLSVPAVNSVCETIPNIASRALPVGGSTTVCENVPNFMSYGLPYGYGFPIG 181
+ SN +S ++ R+ GGS+++ + + G G G
Sbjct: 147 SDCDTGSGSNYGSSTGSSSGYGSGGVSYRSRGHGGSSSIGSG--SGVGLGATSGVGAGSN 204
Query: 182 INPVGGATTVCEPTVHGYGVG 202
+ P GG +T + G G G
Sbjct: 205 VGPSGGCSTCGSGSRSGSGAG 225
>09_06_0172 +
21329904-21331512,21331595-21331740,21332333-21332556,
21333689-21334448
Length = 912
Score = 34.7 bits (76), Expect = 0.056
Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Query: 60 PMLPFPTIGA----GLGYQMPYPFGVGLGFTMG-QPGSTVCETVSNGHTPLGYAGVGFPG 114
P+ P P +G G GY P P+G G G+ G P V+NG GY G+G G
Sbjct: 158 PVAPPPQMGPPPPYGSGYAPPPPYGSGYGYGYGPAPDYGGGMAVANGGYDPGYGGMG--G 215
Query: 115 LSGFAG 120
SG G
Sbjct: 216 ASGGGG 221
>01_01_0929 - 7344911-7345978
Length = 355
Score = 33.1 bits (72), Expect = 0.17
Identities = 35/121 (28%), Positives = 45/121 (37%), Gaps = 9/121 (7%)
Query: 44 PPSTTSVCETSPGNMLPMLPFPTIGAGLGYQMPYPFGVGLGFTMGQ-----PGSTVCETV 98
PPS T P P L P +G L P P G + F + P S+VC +V
Sbjct: 26 PPSKTRRPPPPPPPFCPHLSVPCVGLPLPPPCPPPPG-AIRFPLWHGAATIPASSVCRSV 84
Query: 99 SN---GHTPLGYAGVGFPGLSGFAGLPSIPMPALSNLSVPAVNSVCETIPNIASRALPVG 155
H P V G FAG+P +P L + TI +A+ A G
Sbjct: 85 RGHFVEHLPHVEGRVPGDGEGAFAGVPPEMLPPKKRLLRYHPYAAAWTIQEMANHAREQG 144
Query: 156 G 156
G
Sbjct: 145 G 145
>03_06_0188 + 32212297-32212746
Length = 149
Score = 31.5 bits (68), Expect = 0.52
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 106 GYAGVGFPGLSGFAGLPSIPMPALSNLSVPAVNSVCETIPNIASRALPVGGSTTVCENVP 165
G VG PG+ G+P +P+ VP + V +P I + + G TT+ VP
Sbjct: 53 GVPAVG-PGIPVIPGVPGVPVVGPGIPFVPVIPGVPVIVPIIPGVPM-IAGMTTL--PVP 108
Query: 166 NFMSYGLP-YGYGFPIGINPVGGATTVCEP 194
F+ P G GFP G+ P T +P
Sbjct: 109 PFVPPIDPGAGAGFP-GVPPASSTTVQEDP 137
>12_01_0239 -
1793612-1793716,1793808-1793826,1794424-1794599,
1794701-1794747,1795760-1796291
Length = 292
Score = 31.1 bits (67), Expect = 0.68
Identities = 27/109 (24%), Positives = 38/109 (34%), Gaps = 1/109 (0%)
Query: 101 GHTPLGYAGVGFPGLSGFAGLPSIPMPALSNLSVPAVNSVCETIPNIASRALPVGGSTTV 160
G+ P +G + G G+ G P P + S P + +S + P G
Sbjct: 3 GYPPNPGSGYPYGGAGGY-GAPPPPYGSSPAPSAPPYGAKPPKEGKTSSSSAPYYGGGGG 61
Query: 161 CENVPNFMSYGLPYGYGFPIGINPVGGATTVCEPTVHGYGVGLPFGRSF 209
P+ YG GYG P P G P+ YG +G F
Sbjct: 62 YGAPPSTQPYGSGGGYGAPPSSQPYGAPYGAPPPSSAPYGAPGGYGSPF 110
>01_03_0306 + 14875755-14876822
Length = 355
Score = 30.7 bits (66), Expect = 0.90
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 74 QMPYPFGVGLGFTMGQPGSTVCETVSNG 101
++PYPFG+G G +G+ +C ++G
Sbjct: 35 KIPYPFGIGTGCAIGEGFEIICNRNADG 62
>03_06_0187 + 32209924-32210634
Length = 236
Score = 29.9 bits (64), Expect = 1.6
Identities = 40/145 (27%), Positives = 59/145 (40%), Gaps = 14/145 (9%)
Query: 52 ETSPGNMLPMLP-FPTIGAGLGYQMPYPFGVGLGFTMGQPGSTVCETVSNGHTPLGYAGV 110
E PG +P +P P +G + P +G T+ P T+ G +G
Sbjct: 33 ELVPGIPMPTIPGVPAVGPTIPAIPTIPGVPAVGPTI--PTIPTVPTIP-GVPAVGPTIP 89
Query: 111 GFPGLSGFAGL-PSIP-MPALSNL-SVPAVNSVCETIPNIASRALPVGGSTTVCENVPNF 167
P + G + P+IP +P + + VPAV S TIP I VG + VP
Sbjct: 90 AIPTIPGVPAVGPTIPTIPTIPTIPGVPAVGSTIPTIPTIPG-VPAVGPTIPTIPGVPT- 147
Query: 168 MSYGLPYGYGFP-IGINPVGGATTV 191
+P G P + +NP G T+
Sbjct: 148 ----IPTVPGVPELPVNPGGVVPTI 168
>01_06_1507 -
37838645-37839311,37839393-37839499,37839588-37839663,
37839747-37839869,37840051-37840208,37840311-37840385,
37840466-37840506,37840594-37840670,37840755-37840883,
37840990-37841060,37841237-37841332,37841489-37841584,
37841681-37841953,37842871-37842957,37843101-37843178,
37843350-37843514,37843622-37843768,37843921-37843983,
37844082-37844201,37844352-37844543,37844672-37844748,
37845094-37845196,37845684-37845887
Length = 1074
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 60 PMLPFPTIGAGLGYQMPYPFGVGLGFTMGQPGSTVCETVSNGHTPLGYA 108
P +P+ TI G MPYP G+ PG V + NG P YA
Sbjct: 888 PSMPYQTIMNG----MPYPNGIPPRMEQPAPGWHVPGDLPNGQVPPAYA 932
>01_05_0696 - 24366857-24368200
Length = 447
Score = 29.9 bits (64), Expect = 1.6
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 55 PGNMLPMLPFPTIGAGLGYQMPYPFGVGLGFTMGQPGSTVCETVSNGHTPLGYAGVGFPG 114
PG++ F +GAGLG PY L +MG G+ + + + +G AG G G
Sbjct: 305 PGSLSSYGAFGGVGAGLGGPNPY---ANLPSSMGGGGAGLGSLGNQMPSGMGGAGAGAYG 361
Query: 115 LSGFAG 120
G G
Sbjct: 362 PGGLGG 367
>04_04_1104 -
30928475-30928501,30929008-30929110,30929287-30929340,
30929803-30929895,30930063-30930140,30930416-30930527,
30930618-30930756,30930823-30930910,30930984-30931079,
30931675-30931781,30931874-30932009,30932089-30932186,
30932954-30933047,30933132-30933301,30933749-30933819,
30936066-30936194,30936552-30936654,30936764-30936907,
30937123-30937245,30937482-30937563,30939044-30939120,
30939261-30939315,30939365-30939443,30939544-30939620,
30939739-30939869,30939947-30940120,30940245-30940310,
30940937-30941572
Length = 1113
Score = 29.5 bits (63), Expect = 2.1
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Query: 30 PNYALSSQLYPGLIP---PSTTSVCETSPGNMLPMLPFPTI---GAGLGYQMPYPFGVGL 83
P ++ +L P L+P PS++S +P P P P G G G +P P G+
Sbjct: 37 PKCGMAQRLPPQLMPKPPPSSSSSAAATPAPPAPAAPPPPTSRRGGGGGAALPPPQAQGV 96
Query: 84 GFTMGQPGSTVCETVSN 100
T Q C+ V N
Sbjct: 97 DPTKIQLPCANCQAVLN 113
>06_01_0835 - 6315762-6316844
Length = 360
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/52 (26%), Positives = 24/52 (46%)
Query: 12 ICSVSCNPLGQTTVCESTPNYALSSQLYPGLIPPSTTSVCETSPGNMLPMLP 63
I + + P ++ Y +S Y ++PP TT+ T+ + LP LP
Sbjct: 53 ISTTTTTPFSYSSPLPQESYYLPASSSYAAIVPPPTTTTNTTTSFSELPPLP 104
>04_01_0609 +
7966263-7966366,7967945-7968706,7972607-7972851,
7976940-7977107,7977471-7977734,7977962-7978509
Length = 696
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 46 STTSVCETSPGNMLPMLPFPTIGAGL-----GYQMPYPFGVGLGFTMGQPGS 92
S++ SP P L FP + +PYPFG+G G + PGS
Sbjct: 35 SSSCASPPSPSPSPPPLIFPVPASNCPDKCGNVSIPYPFGIGRGCYLDLPGS 86
>03_02_0249 -
6792210-6792215,6794332-6794607,6794692-6795180,
6795832-6795900,6797316-6797403,6798193-6798224,
6799277-6799308,6799412-6799646
Length = 408
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/51 (31%), Positives = 23/51 (45%)
Query: 112 FPGLSGFAGLPSIPMPALSNLSVPAVNSVCETIPNIASRALPVGGSTTVCE 162
FP G + LPS+ A++ V + N+ S A V GSTT +
Sbjct: 206 FPAFGGSSALPSLAFGAVATTKKEQVQQPSPSSSNVLSFAGQVQGSTTTLD 256
>02_05_0700 + 31018480-31019832
Length = 450
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/45 (37%), Positives = 18/45 (40%)
Query: 21 GQTTVCESTPNYALSSQLYPGLIPPSTTSVCETSPGNMLPMLPFP 65
GQ +S P L Q PG P V E PG LP P P
Sbjct: 53 GQPLPGQSLPGQPLPGQPLPGQSLPGQPLVGEKPPGQPLPGQPLP 97
>01_05_0687 +
24288648-24292746,24293737-24293844,24294333-24294442,
24295208-24295282
Length = 1463
Score = 28.7 bits (61), Expect = 3.7
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 44 PPSTTSVCETSPGNMLPMLPFPTIGAGLGYQMPYPFGVGLGFTMGQ--PGSTVCETVSNG 101
PP+T C++S LP LP PT A + Y P V + + PGSTV V G
Sbjct: 253 PPTTHPECDSSEPAELP-LP-PTSPAEIAYTSPDSVEVDVVAVSPEEAPGSTVAMEVMYG 310
Query: 102 HT 103
T
Sbjct: 311 ET 312
>09_04_0609 -
18929600-18929646,18929753-18929924,18930304-18930498,
18930691-18930801,18930885-18931097,18931643-18931720,
18931894-18932001,18932175-18932316,18932413-18933761,
18934492-18935121
Length = 1014
Score = 28.3 bits (60), Expect = 4.8
Identities = 40/156 (25%), Positives = 63/156 (40%), Gaps = 21/156 (13%)
Query: 55 PGNMLPMLPFPTIGAGLGYQMPYPFGVGLGFTMGQPGSTVCETVSNG---HTPLGYAGVG 111
PG LP +PF +G G+ M +P V L +G + C S G + L V
Sbjct: 374 PGINLPQVPFVD-NSGFGH-MKFPGDVQLMSQIGM-ATPFCTPNSFGIPCYPNLQSPSVW 430
Query: 112 FP--GLSGFAGLPSIPMPALSNLSVPAVNSVCETIPNIASRALPVGGSTTVCENVPNFMS 169
P G+ G+ GLP +P P + + +P S A+ + +T + +
Sbjct: 431 VPPFGIGGY-GLPGPFVP-------PVITNFTPQLPGFPS-AVNLAAATDLFHPYKMYEH 481
Query: 170 YGLPYGYGFPIGINPVGGATTVCEPTVHGYGVGLPF 205
G+P P + +P +H YGVG P+
Sbjct: 482 LGVP----MPSPVPDQSLTHYFQQPPIHPYGVGNPY 513
>09_05_0009 -
20048736-20049423,20049504-20049743,20049832-20050385
Length = 493
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 28 STPNYALSSQLYPGLIPPSTTSVCETSPGNMLPMLPFPT 66
++P AL++ L ++ +++S+ E + LP+LP PT
Sbjct: 5 ASPLCALAAALIAAVVAATSSSLAEATATPPLPVLPVPT 43
>04_03_0303 +
14108902-14109208,14109259-14109286,14110120-14110505,
14111071-14111604,14112362-14112445,14112933-14113516
Length = 640
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 77 YPFGVGLGFTMGQPGSTVCETVSNGHT 103
YPFG+G G G VC T + T
Sbjct: 57 YPFGIGAGCARGHDFQLVCNTTTQPPT 83
>02_05_0584 - 30135768-30135790,30136104-30136866
Length = 261
Score = 27.5 bits (58), Expect = 8.4
Identities = 34/103 (33%), Positives = 40/103 (38%), Gaps = 7/103 (6%)
Query: 53 TSPGNMLPMLPFPTIGAGLGYQMP-YPFGVGLGFTMGQPGSTVCETVSNGHTPL-GYAGV 110
T PG +LP LPFP L + +P P G G G P G
Sbjct: 54 TLPG-LLPGLPFPLFPF-LMFPIPGSPAGAGGAPPSAGSGGFPFPLPFPLPLPAPGSPAA 111
Query: 111 GFPGLSGFAGLPSIPMPALSNLSVPAVNSVCETIPNIASRALP 153
G P SG +G P PMP S L +PA S P + LP
Sbjct: 112 GAPPSSGSSGFP-FPMP--SPLPLPAHGSPAAGAPPSSGSGLP 151
>02_01_0084 -
573638-574305,574705-574900,574997-577246,578053-579174,
579266-579370,579975-580028,580244-580344,580454-581423,
582030-582203,582341-582643,582719-582856,582993-583247,
584230-584370,585008-585289,585395-585540,585627-585690,
585723-585799,586285-586301,587728-587867,587972-588029,
588121-588218,588727-588776,589260-589743
Length = 2630
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 89 QPGSTVCETVSNGHTPLGYAGVGFPGLSGFAGLPSIPMP 127
QPG T + G T AG G+P S +G P P
Sbjct: 5 QPGGTSRDGRGGGSTARANAGTGYPTRSRTSGNPQFSAP 43
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.140 0.450
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,876,008
Number of Sequences: 37544
Number of extensions: 402656
Number of successful extensions: 977
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 955
Number of HSP's gapped (non-prelim): 38
length of query: 210
length of database: 14,793,348
effective HSP length: 79
effective length of query: 131
effective length of database: 11,827,372
effective search space: 1549385732
effective search space used: 1549385732
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)
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