Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001700-TA|BGIBMGA001700-PA|IPR003749|ThiamineS
         (109 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50187| Best HMM Match : SAM_1 (HMM E-Value=3.1e-21)                 29   0.83 
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.4  
SB_16790| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.8  
SB_54691| Best HMM Match : SWIRM (HMM E-Value=0.0033)                  26   7.7  
SB_35206| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.012)            26   7.7  
SB_58343| Best HMM Match : ELM2 (HMM E-Value=1.4e-16)                  26   7.7  
SB_47306| Best HMM Match : I-set (HMM E-Value=0)                       26   7.7  
SB_27871| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.7  

>SB_50187| Best HMM Match : SAM_1 (HMM E-Value=3.1e-21)
          Length = 239

 Score = 29.1 bits (62), Expect = 0.83
 Identities = 19/64 (29%), Positives = 30/64 (46%)

Query: 19  FNKVKRKEIALPPLKTFLPDSQNQNWTLKELLIWLKDNLLVEREELFLKDDSVRPGILVL 78
           F+++K K+  +    T       Q W ++E+  WL +  L E  ELF K D   P +L L
Sbjct: 120 FSRLKSKKPEITKAVTAPAGRIIQFWAVEEVCRWLGNQGLGEYCELFTKHDIRGPELLSL 179

Query: 79  INEE 82
              +
Sbjct: 180 TRND 183


>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 478

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 6/83 (7%)

Query: 22  VKRKEIALPPLKTFLPDSQNQNWTLKELLIWLKDNLLVEREELFLKDDSVRPGILVLINE 81
           VKR+E+ L  +K F    + ++W L + L  L + L + +  +F         +   + E
Sbjct: 294 VKREEVTLEGIKQFFVLVEKEDWKL-DTLCDLYETLTITQAVIFANTRRKVDWLAAKMTE 352

Query: 82  EDW---ELHGQLNYELKENDKIM 101
           +D     +HG ++   KE D IM
Sbjct: 353 KDHTVSSMHGDMSQ--KERDIIM 373


>SB_16790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1902

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 55  DNLLVEREELFLKDDSVRPGILVLINEEDWELHGQLNYELKENDKIM 101
           D+LL E E +  + DSV      L++E+D  LH + +  L END ++
Sbjct: 732 DSLLHEDESVLQEGDSVIHEDASLLHEDDSVLH-EDDSVLYENDSVL 777


>SB_54691| Best HMM Match : SWIRM (HMM E-Value=0.0033)
          Length = 809

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 16/73 (21%), Positives = 40/73 (54%), Gaps = 2/73 (2%)

Query: 31  PLKTFLPDSQNQNWTLKELLIWLKDNLLVEREELFLKDDSVRPGILVLINEEDWELHGQL 90
           PL+  L  S+ +  +L++ +  L+D+  VER+++  ++   +  +  ++ ++D  L   +
Sbjct: 593 PLEAKLKSSEERCQSLQKEIKSLEDDFNVERDQMKEREGEFKQKLQKIVEDKDTLLSDAV 652

Query: 91  --NYELKENDKIM 101
             N  L+E  K++
Sbjct: 653 DANKTLEEGKKML 665


>SB_35206| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.012)
          Length = 1148

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 16/73 (21%), Positives = 40/73 (54%), Gaps = 2/73 (2%)

Query: 31  PLKTFLPDSQNQNWTLKELLIWLKDNLLVEREELFLKDDSVRPGILVLINEEDWELHGQL 90
           PL+  L  S+ +  +L++ +  L+D+  VER+++  ++   +  +  ++ ++D  L   +
Sbjct: 520 PLEAKLKSSEERCQSLQKEIKSLEDDFNVERDQMKEREGEFKQKLQKIVEDKDTLLSDAV 579

Query: 91  --NYELKENDKIM 101
             N  L+E  K++
Sbjct: 580 DANKTLEEGKKML 592


>SB_58343| Best HMM Match : ELM2 (HMM E-Value=1.4e-16)
          Length = 460

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 29  LPPLKTFLPDSQNQNWTLKELLIWLKDNLLVERE 62
           L P K   P + +++ +  E L+W  DN L +R+
Sbjct: 151 LVPKKCIDPSTDDRDLSQMETLVWKPDNSLSDRQ 184


>SB_47306| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1260

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 52   WLKDNLLVEREELFLKDDSVRPGILVLINEE 82
            W+KD  +VE    FL  ++  PGI  L+ ++
Sbjct: 1211 WIKDGQVVEDAGRFLYVENEEPGIFSLVIDD 1241


>SB_27871| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 816

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 29  LPPLKTFLPDSQNQNWTLKELLIWLKDNLLVERE 62
           L P K   P + +++ +  E L+W  DN L +R+
Sbjct: 162 LVPKKCIDPSTDDRDLSQMETLVWKPDNSLSDRQ 195


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.139    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,730,153
Number of Sequences: 59808
Number of extensions: 139296
Number of successful extensions: 243
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 235
Number of HSP's gapped (non-prelim): 13
length of query: 109
length of database: 16,821,457
effective HSP length: 72
effective length of query: 37
effective length of database: 12,515,281
effective search space: 463065397
effective search space used: 463065397
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)