Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001700-TA|BGIBMGA001700-PA|IPR003749|ThiamineS
(109 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g25370.1 68418.m03009 phospholipase D, putative (PLDZETA) ide... 28 1.2
At4g34070.1 68417.m04834 expressed protein 28 1.2
At2g40920.1 68415.m05050 F-box family protein contains Pfam PF00... 28 1.6
At1g56100.1 68414.m06442 pectinesterase inhibitor domain-contain... 28 1.6
At4g00580.1 68417.m00081 COP1-interacting protein-related simila... 27 2.1
At5g06260.1 68418.m00700 nucleolar protein-related contains weak... 27 2.7
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 27 2.7
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 27 3.6
At1g09080.1 68414.m01013 luminal binding protein 3 (BiP-3) (BP3)... 27 3.6
At5g63320.1 68418.m07946 expressed protein 26 4.8
At1g67030.1 68414.m07622 zinc finger (C2H2 type) family protein ... 26 4.8
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 26 6.3
At5g42905.1 68418.m05230 hypothetical protein 25 8.4
At4g26890.1 68417.m03869 protein kinase family protein contains ... 25 8.4
At2g35330.1 68415.m04332 zinc finger (C3HC4-type RING finger) pr... 25 8.4
At1g30930.1 68414.m03786 F-box family protein contains F-box dom... 25 8.4
>At5g25370.1 68418.m03009 phospholipase D, putative (PLDZETA)
identical to phospholipase D zeta SP:P58766 from
[Arabidopsis thaliana]; similar to phospholipase D
[Lycopersicon esculentum] GI:12060550; contains Pfam
profile PF00614: Phospholipase D. Active site motif
Length = 820
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 12 GGGAELLFNKVKRKEIALPPLKTFLPDSQNQNWTLK 47
G G L + + EI +PPL PD++ + WT++
Sbjct: 437 GSGRRYLISMAQLAEITVPPLPIVQPDNE-EGWTVQ 471
>At4g34070.1 68417.m04834 expressed protein
Length = 363
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 66 LKDDSVRPGILVLINEEDWELHGQLNYELKENDKIMFISTLHG 108
L +DSV L+L E W + G L + K+++ S+LHG
Sbjct: 302 LYEDSVSSDRLLLKKEYAWHIGGALPHHELVEWKLLYRSSLHG 344
>At2g40920.1 68415.m05050 F-box family protein contains Pfam
PF00646: F-box domain; similar to F-box protein family,
AtFBX8 (GP:20197464) {Arabidopsis
thaliana}|502017|gb|T20576.1|T20576
Length = 436
Score = 27.9 bits (59), Expect = 1.6
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Query: 2 AETLTVEVMFGGGAELLFNKVKRKEIALPPLKTFLPDSQNQNWTLKELLIWLKDNLLVER 61
A T+ +++ GG +F K+ L L D+ W+ K L++ LVE
Sbjct: 306 AVTMMADLIEYGGKIAIFYHTNLKDEGSADLWV-LEDTGKSEWSKKTLVLQPCQRHLVED 364
Query: 62 EELFLKDDSVRPGILVLINEEDWELHGQLNYELKEND 98
EL +K + + G ++L E L Y L+ ND
Sbjct: 365 IELIVK-GTTQDGKVILAPVEMHSRFYILYYNLQSND 400
>At1g56100.1 68414.m06442 pectinesterase inhibitor domain-containing
protein contains TIGRFAM TIGR01614: pectinesterase
inhibitor domain; contains weak hit to Pfam PF04043:
Plant invertase/pectin methylesterase inhibitor
Length = 232
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 55 DNLLVEREELFLKDDSVRPGILVLINEEDWELHGQLNYELKEND 98
DNLL E + DD+ + GI+ ++N + + +LKE D
Sbjct: 118 DNLLAELNQT--TDDAEKEGIIDVVNATSEAIENETEVDLKEKD 159
>At4g00580.1 68417.m00081 COP1-interacting protein-related similar
to COP1-interacting protein 4 (CIP4) [Arabidopsis
thaliana] GI:13160646
Length = 317
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 55 DNLLVEREELFLKDDSVRPGILVLINEEDWELHGQLNYELKEND 98
DNLL E + DD+ + GI+ L+N + + +KE D
Sbjct: 203 DNLLAELNQT--SDDAEKEGIIGLVNATSEAIENETEMSVKEKD 244
>At5g06260.1 68418.m00700 nucleolar protein-related contains weak
similarity to nucleolar protein C7C (GI:13540302)
[Rattus norvegicus]
Length = 424
Score = 27.1 bits (57), Expect = 2.7
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 66 LKDDSVRPGILVLINEEDWELHGQLNYELKENDKIMFISTLHG 108
L +DSV L+L E W + G L + K+++ S++HG
Sbjct: 206 LYEDSVSSDRLLLKKEYAWHIGGALPHHELVEWKLLYHSSVHG 248
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 27.1 bits (57), Expect = 2.7
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 22 VKRKEIALPPLKTFLPDSQNQNWTLKELLIWLKDNLLVEREELFL 66
VKR E+ L +K F + + ++W L E L L + L + + +F+
Sbjct: 242 VKRDELTLEGIKQFYVNVEKEDWKL-ETLCDLYETLAITQSVIFV 285
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 22 VKRKEIALPPLKTFLPDSQNQNWTLKELLIWLKDNLLVEREELFL 66
VKR E+ L +K F + + + W L E L L + L + + +F+
Sbjct: 242 VKRDELTLEGIKQFYVNVEKEEWKL-ETLCDLYETLAITQSVIFV 285
>At1g09080.1 68414.m01013 luminal binding protein 3 (BiP-3) (BP3)
Similar to Arabidopsis luminal binding protein
(gb|D89342); contains Pfam domain PF00012: dnaK protein
Length = 678
Score = 26.6 bits (56), Expect = 3.6
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 38 DSQNQNWTLKELLIWLKDNLLVEREE 63
D + LKE L WL++N+ E+E+
Sbjct: 612 DKEKMEGVLKEALEWLEENVNAEKED 637
>At5g63320.1 68418.m07946 expressed protein
Length = 569
Score = 26.2 bits (55), Expect = 4.8
Identities = 16/57 (28%), Positives = 25/57 (43%)
Query: 26 EIALPPLKTFLPDSQNQNWTLKELLIWLKDNLLVEREELFLKDDSVRPGILVLINEE 82
E PP + PDS ++ + L D ++ RE+ F K + P L + EE
Sbjct: 49 EETAPPERQISPDSPDKRYRAAFLKNRFADTIMKAREKAFTKGEKGDPEKLRIEREE 105
>At1g67030.1 68414.m07622 zinc finger (C2H2 type) family protein
(ZFP6) identical to zinc finger protein, ZFP6
gi|790683|gb|AAA87302; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 197
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 10 MFGGGAELLFNKVKRKEIALPPLKTFLPDSQNQN 43
++GGG E + +VK +LP ++ F DS +
Sbjct: 146 LYGGGMESMAGEVKTHGGSLPEMRRFAGDSDRSS 179
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 25.8 bits (54), Expect = 6.3
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 22 VKRKEIALPPLKTFLPDSQNQNWTLKELLIWLKDNLLVEREELFL 66
VKR E+ L +K F + + W L E L L + L + + +F+
Sbjct: 244 VKRDELTLEGIKQFYVNVDKEEWKL-ETLCDLYETLAITQSVIFV 287
>At5g42905.1 68418.m05230 hypothetical protein
Length = 258
Score = 25.4 bits (53), Expect = 8.4
Identities = 15/51 (29%), Positives = 23/51 (45%)
Query: 7 VEVMFGGGAELLFNKVKRKEIALPPLKTFLPDSQNQNWTLKELLIWLKDNL 57
V ++ GG E + + + L F+P + Q + K L WL DNL
Sbjct: 16 VSQVYIGGVESVLHVFRDCPAQLGIWVRFVPRRRQQGFFSKSLFEWLYDNL 66
>At4g26890.1 68417.m03869 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 444
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 32 LKTFLPDSQNQNWTLKELL 50
LK L + Q Q WT++ELL
Sbjct: 230 LKNCLKEDQKQRWTVEELL 248
>At2g35330.1 68415.m04332 zinc finger (C3HC4-type RING finger)
protein-related contains weak hit to Pfam profile:
PF00097 zinc finger, C3HC4 type (RING finger); weak
similarity to RING finger protein 8 (Swiss-Prot:O76064)
[Homo sapiens]
Length = 738
Score = 25.4 bits (53), Expect = 8.4
Identities = 20/97 (20%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
Query: 7 VEVMFGGGAELLFNKVKRKEIALPPLKTFLPDSQNQNWTLKELLIWLKDNLLVEREELFL 66
V + AE+ K A L + S+ + LK+LL W K + ++ +E+
Sbjct: 486 VRALENESAEIRAEMEASKLSASESLTACMEASKKEKKCLKKLLAWEKQKMKLQ-DEITA 544
Query: 67 KDDSVRP--GILVLINEEDWELHGQLNYELKENDKIM 101
+ + ++ L I +E+ E + E K ++++
Sbjct: 545 EKEKIKALNRALAQITQEEKEYEAKWRQEQKAKEQVL 581
>At1g30930.1 68414.m03786 F-box family protein contains F-box domain
Pfam:PF00646
Length = 376
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 63 ELFLKDDSVRPGILVLINEEDWELHGQLNYELKENDKIM 101
ELFL RP IL ++ + +W L+ +N ++
Sbjct: 43 ELFLTRSKARPRILFVVQDGEWSEWSFLSLPQPQNSSLV 81
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.139 0.411
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,818,911
Number of Sequences: 28952
Number of extensions: 111734
Number of successful extensions: 248
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 240
Number of HSP's gapped (non-prelim): 16
length of query: 109
length of database: 12,070,560
effective HSP length: 71
effective length of query: 38
effective length of database: 10,014,968
effective search space: 380568784
effective search space used: 380568784
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)
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