SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001700-TA|BGIBMGA001700-PA|IPR003749|ThiamineS
         (109 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC548.04 |||ubiquitin family protein Urm1 |Schizosaccharomyces...    69   2e-13
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    28   0.29 
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    25   2.0  
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa...    25   2.7  
SPCC16C4.16c |||conserved fungal protein|Schizosaccharomyces pom...    25   2.7  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   3.5  
SPCC1020.04c |rpb6|rpo15|DNA-directed RNA polymerase I, II and I...    24   4.7  
SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit Cut9|...    24   6.2  
SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr...    23   8.1  
SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr...    23   8.1  

>SPCC548.04 |||ubiquitin family protein Urm1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 113

 Score = 68.5 bits (160), Expect = 2e-13
 Identities = 36/104 (34%), Positives = 64/104 (61%), Gaps = 8/104 (7%)

Query: 5   LTVEVMFGGGAELLFNKVKRKEIALPPLKTFLPDSQNQNWTLKELLIWLKDNLLVEREEL 64
           + ++V   GG +LLFNK K   ++L  L         +  +L + +  + +     +++L
Sbjct: 1   MAIKVELLGGLDLLFNKQKALSLSLSNL------GSTKLGSLIDYMAQIIEK--PSQKDL 52

Query: 65  FLKDDSVRPGILVLINEEDWELHGQLNYELKENDKIMFISTLHG 108
           F+ + +VRPGI+VL+N++DWEL  +  Y L+E D+++F+STLHG
Sbjct: 53  FILNGTVRPGIIVLVNDQDWELLEKEEYNLEEGDEVVFVSTLHG 96


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 28.3 bits (60), Expect = 0.29
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 53  LKDNLLVEREELFLKDDSVRPGILVLINEEDWELHGQLNY 92
           LK+  L +  ++ LKDD+V P  L+L+ + DW+   Q+ Y
Sbjct: 646 LKEEFLYDLIQIRLKDDNVFP-TLLLLRKFDWKDDYQILY 684


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 5/50 (10%)

Query: 60  EREELFLKDDSVRPGILVLINEEDWELH-----GQLNYELKENDKIMFIS 104
           EREE+FL+DD  +     L++ +D  L        + +EL  +    FIS
Sbjct: 7   EREEVFLEDDQAQHSQAELLSSKDENLQPSIPLSPVAFELDFSGNFQFIS 56


>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 394

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 6/83 (7%)

Query: 22  VKRKEIALPPLKTFLPDSQNQNWTLKELLIWLKDNLLVEREELFLKDDSVRPGILVLINE 81
           VKR E+ L  LK +    + + W   + L  L D L + +  +F         +   + E
Sbjct: 224 VKRDELTLEGLKQYFIAVEKEEWKF-DTLCDLYDTLTITQAVIFCNSRRKVDWLTEKMRE 282

Query: 82  EDW---ELHGQLNYELKENDKIM 101
            ++    +HG++    KE D IM
Sbjct: 283 ANFTVTSMHGEM--PQKERDAIM 303


>SPCC16C4.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 161

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 52  WLKDNLLVEREELFLKDDSVRPGILVLINEEDWELHGQLNYELKENDKI 100
           W+ DN   E   ++  DD  R  +  LI E   E   +L Y+ K +  +
Sbjct: 68  WINDN---ECNVVYADDDVSRNALFHLIMESPTEFSEELEYQTKPHPTV 113


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 18   LFNKVKRKEIALPPLKTFLPDSQNQNWTLKELLIWLKDNLLVEREELFLKDDSVRPGILV 77
            L ++++  ++A   LK  L D  NQ   LKE ++  K++L++  EE           +L 
Sbjct: 1381 LSSRLEDNQLATNKLKNQL-DHLNQEIRLKEDVLKEKESLIISLEESLSNQRQKESSLLD 1439

Query: 78   LINE 81
              NE
Sbjct: 1440 AKNE 1443


>SPCC1020.04c |rpb6|rpo15|DNA-directed RNA polymerase I, II and III
           subunit Rpb6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 142

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 9/35 (25%), Positives = 23/35 (65%), Gaps = 1/35 (2%)

Query: 16  ELLFNKVKRKEIALPPLKTFLPDSQNQNWTLKELL 50
           ++   ++ +K+I L  ++ +LPD   ++W++ EL+
Sbjct: 109 QIAMKELAQKKIPLL-VRRYLPDGSYEDWSVAELI 142


>SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit
           Cut9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 23.8 bits (49), Expect = 6.2
 Identities = 9/31 (29%), Positives = 18/31 (58%)

Query: 77  VLINEEDWELHGQLNYELKENDKIMFISTLH 107
           +L  +E+W+L  +LNY     +   F+ +L+
Sbjct: 245 LLTADEEWDLVLKLNYSTYSKEDAAFLRSLY 275


>SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 473

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 10/32 (31%), Positives = 15/32 (46%)

Query: 22  VKRKEIALPPLKTFLPDSQNQNWTLKELLIWL 53
           ++ +   +P  +  LP S N    L E L WL
Sbjct: 100 IRFRGYTIPECQKLLPSSPNGKQPLPESLFWL 131


>SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 178

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 20  NKVKRKEIALPPLKTFLPDSQNQNWTLKELL 50
           NK  +KE    P +  L  +QNQ  +L +LL
Sbjct: 109 NKKSKKETVSSPAEQLLALTQNQEISLYKLL 139


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.139    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 538,734
Number of Sequences: 5004
Number of extensions: 22026
Number of successful extensions: 51
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 44
Number of HSP's gapped (non-prelim): 10
length of query: 109
length of database: 2,362,478
effective HSP length: 64
effective length of query: 45
effective length of database: 2,042,222
effective search space: 91899990
effective search space used: 91899990
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 48 (23.4 bits)

- SilkBase 1999-2023 -