Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001700-TA|BGIBMGA001700-PA|IPR003749|ThiamineS
(109 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC548.04 |||ubiquitin family protein Urm1 |Schizosaccharomyces... 69 2e-13
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 28 0.29
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 25 2.0
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 25 2.7
SPCC16C4.16c |||conserved fungal protein|Schizosaccharomyces pom... 25 2.7
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 3.5
SPCC1020.04c |rpb6|rpo15|DNA-directed RNA polymerase I, II and I... 24 4.7
SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit Cut9|... 24 6.2
SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr... 23 8.1
SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr... 23 8.1
>SPCC548.04 |||ubiquitin family protein Urm1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 113
Score = 68.5 bits (160), Expect = 2e-13
Identities = 36/104 (34%), Positives = 64/104 (61%), Gaps = 8/104 (7%)
Query: 5 LTVEVMFGGGAELLFNKVKRKEIALPPLKTFLPDSQNQNWTLKELLIWLKDNLLVEREEL 64
+ ++V GG +LLFNK K ++L L + +L + + + + +++L
Sbjct: 1 MAIKVELLGGLDLLFNKQKALSLSLSNL------GSTKLGSLIDYMAQIIEK--PSQKDL 52
Query: 65 FLKDDSVRPGILVLINEEDWELHGQLNYELKENDKIMFISTLHG 108
F+ + +VRPGI+VL+N++DWEL + Y L+E D+++F+STLHG
Sbjct: 53 FILNGTVRPGIIVLVNDQDWELLEKEEYNLEEGDEVVFVSTLHG 96
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 28.3 bits (60), Expect = 0.29
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 53 LKDNLLVEREELFLKDDSVRPGILVLINEEDWELHGQLNY 92
LK+ L + ++ LKDD+V P L+L+ + DW+ Q+ Y
Sbjct: 646 LKEEFLYDLIQIRLKDDNVFP-TLLLLRKFDWKDDYQILY 684
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 25.4 bits (53), Expect = 2.0
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 60 EREELFLKDDSVRPGILVLINEEDWELH-----GQLNYELKENDKIMFIS 104
EREE+FL+DD + L++ +D L + +EL + FIS
Sbjct: 7 EREEVFLEDDQAQHSQAELLSSKDENLQPSIPLSPVAFELDFSGNFQFIS 56
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 25.0 bits (52), Expect = 2.7
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 22 VKRKEIALPPLKTFLPDSQNQNWTLKELLIWLKDNLLVEREELFLKDDSVRPGILVLINE 81
VKR E+ L LK + + + W + L L D L + + +F + + E
Sbjct: 224 VKRDELTLEGLKQYFIAVEKEEWKF-DTLCDLYDTLTITQAVIFCNSRRKVDWLTEKMRE 282
Query: 82 EDW---ELHGQLNYELKENDKIM 101
++ +HG++ KE D IM
Sbjct: 283 ANFTVTSMHGEM--PQKERDAIM 303
>SPCC16C4.16c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 161
Score = 25.0 bits (52), Expect = 2.7
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 52 WLKDNLLVEREELFLKDDSVRPGILVLINEEDWELHGQLNYELKENDKI 100
W+ DN E ++ DD R + LI E E +L Y+ K + +
Sbjct: 68 WINDN---ECNVVYADDDVSRNALFHLIMESPTEFSEELEYQTKPHPTV 113
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 24.6 bits (51), Expect = 3.5
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 18 LFNKVKRKEIALPPLKTFLPDSQNQNWTLKELLIWLKDNLLVEREELFLKDDSVRPGILV 77
L ++++ ++A LK L D NQ LKE ++ K++L++ EE +L
Sbjct: 1381 LSSRLEDNQLATNKLKNQL-DHLNQEIRLKEDVLKEKESLIISLEESLSNQRQKESSLLD 1439
Query: 78 LINE 81
NE
Sbjct: 1440 AKNE 1443
>SPCC1020.04c |rpb6|rpo15|DNA-directed RNA polymerase I, II and III
subunit Rpb6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 142
Score = 24.2 bits (50), Expect = 4.7
Identities = 9/35 (25%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 16 ELLFNKVKRKEIALPPLKTFLPDSQNQNWTLKELL 50
++ ++ +K+I L ++ +LPD ++W++ EL+
Sbjct: 109 QIAMKELAQKKIPLL-VRRYLPDGSYEDWSVAELI 142
>SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit
Cut9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 23.8 bits (49), Expect = 6.2
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 77 VLINEEDWELHGQLNYELKENDKIMFISTLH 107
+L +E+W+L +LNY + F+ +L+
Sbjct: 245 LLTADEEWDLVLKLNYSTYSKEDAAFLRSLY 275
>SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 473
Score = 23.4 bits (48), Expect = 8.1
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 22 VKRKEIALPPLKTFLPDSQNQNWTLKELLIWL 53
++ + +P + LP S N L E L WL
Sbjct: 100 IRFRGYTIPECQKLLPSSPNGKQPLPESLFWL 131
>SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 178
Score = 23.4 bits (48), Expect = 8.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 20 NKVKRKEIALPPLKTFLPDSQNQNWTLKELL 50
NK +KE P + L +QNQ +L +LL
Sbjct: 109 NKKSKKETVSSPAEQLLALTQNQEISLYKLL 139
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.139 0.411
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 538,734
Number of Sequences: 5004
Number of extensions: 22026
Number of successful extensions: 51
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 44
Number of HSP's gapped (non-prelim): 10
length of query: 109
length of database: 2,362,478
effective HSP length: 64
effective length of query: 45
effective length of database: 2,042,222
effective search space: 91899990
effective search space used: 91899990
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 48 (23.4 bits)
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