BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001700-TA|BGIBMGA001700-PA|IPR003749|ThiamineS (109 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC548.04 |||ubiquitin family protein Urm1 |Schizosaccharomyces... 69 2e-13 SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 28 0.29 SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 25 2.0 SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 25 2.7 SPCC16C4.16c |||conserved fungal protein|Schizosaccharomyces pom... 25 2.7 SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 3.5 SPCC1020.04c |rpb6|rpo15|DNA-directed RNA polymerase I, II and I... 24 4.7 SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit Cut9|... 24 6.2 SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr... 23 8.1 SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr... 23 8.1 >SPCC548.04 |||ubiquitin family protein Urm1 |Schizosaccharomyces pombe|chr 3|||Manual Length = 113 Score = 68.5 bits (160), Expect = 2e-13 Identities = 36/104 (34%), Positives = 64/104 (61%), Gaps = 8/104 (7%) Query: 5 LTVEVMFGGGAELLFNKVKRKEIALPPLKTFLPDSQNQNWTLKELLIWLKDNLLVEREEL 64 + ++V GG +LLFNK K ++L L + +L + + + + +++L Sbjct: 1 MAIKVELLGGLDLLFNKQKALSLSLSNL------GSTKLGSLIDYMAQIIEK--PSQKDL 52 Query: 65 FLKDDSVRPGILVLINEEDWELHGQLNYELKENDKIMFISTLHG 108 F+ + +VRPGI+VL+N++DWEL + Y L+E D+++F+STLHG Sbjct: 53 FILNGTVRPGIIVLVNDQDWELLEKEEYNLEEGDEVVFVSTLHG 96 >SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosaccharomyces pombe|chr 1|||Manual Length = 1049 Score = 28.3 bits (60), Expect = 0.29 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%) Query: 53 LKDNLLVEREELFLKDDSVRPGILVLINEEDWELHGQLNY 92 LK+ L + ++ LKDD+V P L+L+ + DW+ Q+ Y Sbjct: 646 LKEEFLYDLIQIRLKDDNVFP-TLLLLRKFDWKDDYQILY 684 >SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizosaccharomyces pombe|chr 3|||Manual Length = 1338 Score = 25.4 bits (53), Expect = 2.0 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 5/50 (10%) Query: 60 EREELFLKDDSVRPGILVLINEEDWELH-----GQLNYELKENDKIMFIS 104 EREE+FL+DD + L++ +D L + +EL + FIS Sbjct: 7 EREEVFLEDDQAQHSQAELLSSKDENLQPSIPLSPVAFELDFSGNFQFIS 56 >SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosaccharomyces pombe|chr 1|||Manual Length = 394 Score = 25.0 bits (52), Expect = 2.7 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 6/83 (7%) Query: 22 VKRKEIALPPLKTFLPDSQNQNWTLKELLIWLKDNLLVEREELFLKDDSVRPGILVLINE 81 VKR E+ L LK + + + W + L L D L + + +F + + E Sbjct: 224 VKRDELTLEGLKQYFIAVEKEEWKF-DTLCDLYDTLTITQAVIFCNSRRKVDWLTEKMRE 282 Query: 82 EDW---ELHGQLNYELKENDKIM 101 ++ +HG++ KE D IM Sbjct: 283 ANFTVTSMHGEM--PQKERDAIM 303 >SPCC16C4.16c |||conserved fungal protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 161 Score = 25.0 bits (52), Expect = 2.7 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 3/49 (6%) Query: 52 WLKDNLLVEREELFLKDDSVRPGILVLINEEDWELHGQLNYELKENDKI 100 W+ DN E ++ DD R + LI E E +L Y+ K + + Sbjct: 68 WINDN---ECNVVYADDDVSRNALFHLIMESPTEFSEELEYQTKPHPTV 113 >SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces pombe|chr 1|||Manual Length = 1957 Score = 24.6 bits (51), Expect = 3.5 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 18 LFNKVKRKEIALPPLKTFLPDSQNQNWTLKELLIWLKDNLLVEREELFLKDDSVRPGILV 77 L ++++ ++A LK L D NQ LKE ++ K++L++ EE +L Sbjct: 1381 LSSRLEDNQLATNKLKNQL-DHLNQEIRLKEDVLKEKESLIISLEESLSNQRQKESSLLD 1439 Query: 78 LINE 81 NE Sbjct: 1440 AKNE 1443 >SPCC1020.04c |rpb6|rpo15|DNA-directed RNA polymerase I, II and III subunit Rpb6|Schizosaccharomyces pombe|chr 3|||Manual Length = 142 Score = 24.2 bits (50), Expect = 4.7 Identities = 9/35 (25%), Positives = 23/35 (65%), Gaps = 1/35 (2%) Query: 16 ELLFNKVKRKEIALPPLKTFLPDSQNQNWTLKELL 50 ++ ++ +K+I L ++ +LPD ++W++ EL+ Sbjct: 109 QIAMKELAQKKIPLL-VRRYLPDGSYEDWSVAELI 142 >SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit Cut9|Schizosaccharomyces pombe|chr 1|||Manual Length = 671 Score = 23.8 bits (49), Expect = 6.2 Identities = 9/31 (29%), Positives = 18/31 (58%) Query: 77 VLINEEDWELHGQLNYELKENDKIMFISTLH 107 +L +E+W+L +LNY + F+ +L+ Sbjct: 245 LLTADEEWDLVLKLNYSTYSKEDAAFLRSLY 275 >SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr 1|||Manual Length = 473 Score = 23.4 bits (48), Expect = 8.1 Identities = 10/32 (31%), Positives = 15/32 (46%) Query: 22 VKRKEIALPPLKTFLPDSQNQNWTLKELLIWL 53 ++ + +P + LP S N L E L WL Sbjct: 100 IRFRGYTIPECQKLLPSSPNGKQPLPESLFWL 131 >SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr 2|||Manual Length = 178 Score = 23.4 bits (48), Expect = 8.1 Identities = 12/31 (38%), Positives = 17/31 (54%) Query: 20 NKVKRKEIALPPLKTFLPDSQNQNWTLKELL 50 NK +KE P + L +QNQ +L +LL Sbjct: 109 NKKSKKETVSSPAEQLLALTQNQEISLYKLL 139 Database: spombe Posted date: Oct 3, 2007 3:31 PM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.139 0.411 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 538,734 Number of Sequences: 5004 Number of extensions: 22026 Number of successful extensions: 51 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 44 Number of HSP's gapped (non-prelim): 10 length of query: 109 length of database: 2,362,478 effective HSP length: 64 effective length of query: 45 effective length of database: 2,042,222 effective search space: 91899990 effective search space used: 91899990 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits) S2: 48 (23.4 bits)
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