Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001700-TA|BGIBMGA001700-PA|IPR003749|ThiamineS
(109 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0304 - 16469075-16469192,16469874-16469956,16470079-164701... 100 3e-22
09_02_0154 + 5055946-5058721,5058754-5058770 31 0.15
01_03_0223 + 13924231-13924510,13924670-13924893,13925482-139257... 31 0.26
12_01_0371 - 2851186-2851491,2851582-2851765,2851967-2852156,285... 28 1.8
04_01_0084 - 912255-912368,912738-912822,914050-917105,920290-92... 28 1.8
06_02_0043 - 10906806-10907036,10907757-10907897 27 2.4
04_04_0208 - 23605701-23607149 27 4.3
05_04_0184 - 18855062-18855604,18855889-18856611 26 5.6
01_06_0684 + 31196825-31197252,31199189-31199291,31199402-311995... 26 5.6
12_01_0619 - 5102970-5103750,5103825-5104065,5104794-5104797 26 7.4
12_01_0618 - 5099021-5099668,5099701-5100221,5100311-5100352,510... 26 7.4
02_01_0355 + 2558792-2558862,2558993-2559099,2559185-2559615,256... 26 7.4
01_05_0048 - 17561963-17563585 26 7.4
12_02_0600 + 20903688-20903690,20904168-20904368,20904455-209045... 25 9.8
06_03_1284 - 28988287-28988922,28989335-28989765,28989850-289899... 25 9.8
02_04_0038 - 19110520-19110574,19110684-19110811,19110912-191110... 25 9.8
01_07_0105 - 41104655-41104851,41105818-41107150 25 9.8
>07_03_0304 -
16469075-16469192,16469874-16469956,16470079-16470157,
16470269-16470291
Length = 100
Score = 100 bits (239), Expect = 3e-22
Identities = 56/106 (52%), Positives = 71/106 (66%), Gaps = 9/106 (8%)
Query: 5 LTVEVMFGGGAELLFNK-VKRKEIALPPLKTFLPDSQNQNWTLKELLIWLKDNLLVEREE 63
LT+E FGGG ELL K K ++ L P + + +K LL W+K NL+ ER E
Sbjct: 3 LTLE--FGGGLELLLEKSTKVHKVDLQP------NDGDGKVVMKGLLAWVKSNLIKERPE 54
Query: 64 LFLKDDSVRPGILVLINEEDWELHGQLNYELKENDKIMFISTLHGG 109
+FLK DSVRPG+LVLIN+ DWEL G L+ EL+E D ++FISTLHGG
Sbjct: 55 MFLKGDSVRPGVLVLINDCDWELCGGLDAELEEKDVVVFISTLHGG 100
>09_02_0154 + 5055946-5058721,5058754-5058770
Length = 930
Score = 31.5 bits (68), Expect = 0.15
Identities = 11/29 (37%), Positives = 24/29 (82%), Gaps = 1/29 (3%)
Query: 79 INEEDWEL-HGQLNYELKENDKIMFISTL 106
I+E +W+L +GQLN++L +N K+ +++++
Sbjct: 393 IDEAEWKLFYGQLNWQLTKNQKLNYVTSI 421
>01_03_0223 +
13924231-13924510,13924670-13924893,13925482-13925735,
13926041-13926422,13926938-13927369
Length = 523
Score = 30.7 bits (66), Expect = 0.26
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 76 LVLINEEDWELHGQLNYELKENDKIMFISTL 106
L+L N EDWE H ++ + +DK+ F+S +
Sbjct: 143 LILANGEDWERHRKVVHPAFNHDKLKFMSVV 173
>12_01_0371 -
2851186-2851491,2851582-2851765,2851967-2852156,
2853375-2853613,2853862-2853947,2854720-2854827,
2854929-2855031,2855152-2855213
Length = 425
Score = 27.9 bits (59), Expect = 1.8
Identities = 10/40 (25%), Positives = 24/40 (60%)
Query: 69 DSVRPGILVLINEEDWELHGQLNYELKENDKIMFISTLHG 108
+++ P +L+L E W + G + + + ++++ S+LHG
Sbjct: 213 ENISPDLLLLNKEYAWHIGGGFSQQEVQEWRLLYHSSLHG 252
>04_01_0084 -
912255-912368,912738-912822,914050-917105,920290-920508
Length = 1157
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 18 LFNKVKRKEIALPPLKTFLPDSQNQNWTLKELLI 51
+F ++K+ +++ +KT S NW+LKELL+
Sbjct: 623 VFERLKQLDVSGTCIKTLDLRSMRGNWSLKELLL 656
>06_02_0043 - 10906806-10907036,10907757-10907897
Length = 123
Score = 27.5 bits (58), Expect = 2.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 24 RKEIALPPLKTFLPDSQNQNWTLKELL 50
R+E+ PPL LP Q Q+W + L+
Sbjct: 31 RREVPPPPLDPILPYLQGQSWCMHLLM 57
>04_04_0208 - 23605701-23607149
Length = 482
Score = 26.6 bits (56), Expect = 4.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 5 LTVEVMFGGGAELLFNKVKRKEIALPPL 32
L++ + G A +LFN + EI LPPL
Sbjct: 90 LSIALYGGQSAFVLFNPITTTEIVLPPL 117
>05_04_0184 - 18855062-18855604,18855889-18856611
Length = 421
Score = 26.2 bits (55), Expect = 5.6
Identities = 10/33 (30%), Positives = 21/33 (63%)
Query: 8 EVMFGGGAELLFNKVKRKEIALPPLKTFLPDSQ 40
+++ G G +++F +K K+ LP + + LP+ Q
Sbjct: 209 DIITGNGYKVIFEHIKGKDNNLPDMLSRLPELQ 241
>01_06_0684 +
31196825-31197252,31199189-31199291,31199402-31199512,
31199614-31199697,31199915-31199986,31200073-31200129,
31200427-31200546,31201301-31201324,31201953-31202063,
31202165-31202202,31202287-31202443,31202700-31202801,
31202878-31202934,31203113-31203259,31203429-31203499,
31203582-31203669,31203810-31203866,31203996-31204193
Length = 674
Score = 26.2 bits (55), Expect = 5.6
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 21 KVKRKEIALPP----LKTFLPDSQNQNWTLKELLIWLK--DNLLVERE 62
KVK K +L L+ F D Q Q W + L+ WL D+LL + E
Sbjct: 177 KVKEKPTSLKAAWELLEIFFVDKQLQTWLPERLVDWLADYDSLLTKTE 224
>12_01_0619 - 5102970-5103750,5103825-5104065,5104794-5104797
Length = 341
Score = 25.8 bits (54), Expect = 7.4
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 32 LKTFLPDSQNQNWTLKELLIWLKDNLLVEREELFLKDDSVRPGILVLINEEDWELHGQLN 91
LKT L + +++N K +L KD + L + D+ + +L+ E+D H ++
Sbjct: 172 LKTMLGEEKDKNEHYKTMLAKEKDKAEHHKNMLEEEKDNNKRLKTMLVEEKDKNKHHKII 231
Query: 92 YELKENDKIMFISTL 106
E +E DK + T+
Sbjct: 232 LE-EEKDKNERLKTM 245
>12_01_0618 -
5099021-5099668,5099701-5100221,5100311-5100352,
5100905-5100962
Length = 422
Score = 25.8 bits (54), Expect = 7.4
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 32 LKTFLPDSQNQNWTLKELLIWLKDNLLVEREELFLKDDSVRPGILVLINEEDWELHGQLN 91
LKT L + +N+N LK +L+ KDN E + L ++ + G+L + E+ + + +L
Sbjct: 99 LKTNLTEEKNKNECLKIMLVDEKDN--NECLKTNLAEEKDKNGLLKTMLAEEKDKYERLK 156
Query: 92 YEL-KENDK 99
L E DK
Sbjct: 157 TMLADEEDK 165
>02_01_0355 +
2558792-2558862,2558993-2559099,2559185-2559615,
2560100-2560735
Length = 414
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 22 VKRKEIALPPLKTFLPDSQNQNWTLKELLIWLKDNLLVEREELFL 66
VKR E+ L +K F + + ++W L + L L + L + + +F+
Sbjct: 244 VKRDELTLEGIKQFYVNVEKEDWKL-DTLCDLYETLAITQSVIFV 287
>01_05_0048 - 17561963-17563585
Length = 540
Score = 25.8 bits (54), Expect = 7.4
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 15 AELLFNKVKRKEIALPPLKTFLPDSQNQNWTLKELLIWLKDNLLVEREELFLKDDSVRPG 74
A +F ++KRK +P LKT+ + W ++ L+ LK + E + +K D V G
Sbjct: 242 AHAIFKEMKRKGRFIPDLKTY--TVLMEGWGHEKDLLMLK-AVYQEMLDAGIKPDVVAYG 298
Query: 75 ILV 77
+L+
Sbjct: 299 MLI 301
>12_02_0600 +
20903688-20903690,20904168-20904368,20904455-20904522,
20904739-20904841
Length = 124
Score = 25.4 bits (53), Expect = 9.8
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 27 IALPPLKTFLPDSQNQNWTLKEL---LIWLKDNLLVEREEL 64
I+ PP+K F D N T +L + W ++ L+ ++EL
Sbjct: 84 ISRPPIKVFFYDDWNMPHTAAKLQFPIFWDEECLIAPKDEL 124
>06_03_1284 -
28988287-28988922,28989335-28989765,28989850-28989956,
28990066-28990136
Length = 414
Score = 25.4 bits (53), Expect = 9.8
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 22 VKRKEIALPPLKTFLPDSQNQNWTLKELLIWLKDNLLVEREELFL 66
VKR E+ L +K F + + + W L + L L + L + + +F+
Sbjct: 244 VKRDELTLEGIKQFYVNVEKEEWKL-DTLCDLYETLAITQSVIFV 287
>02_04_0038 -
19110520-19110574,19110684-19110811,19110912-19111085,
19111189-19111320,19111391-19111489,19111680-19111751,
19111831-19111887,19111957-19112130,19112211-19112305,
19112478-19112577,19112672-19112824,19112896-19114026,
19114621-19114731,19114829-19114991,19115364-19115458,
19115613-19115804,19115929-19116069
Length = 1023
Score = 25.4 bits (53), Expect = 9.8
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 28 ALPPLKTFLPDSQNQNWTLKELLIWLKDNLLVEREELFLKDDSVR 72
AL T LP N+N L E+L KD+ L R F++ S+R
Sbjct: 599 ALYTFPTLLP-CVNENVPLSEILPLQKDSTLASRALKFIQSMSLR 642
>01_07_0105 - 41104655-41104851,41105818-41107150
Length = 509
Score = 25.4 bits (53), Expect = 9.8
Identities = 10/43 (23%), Positives = 23/43 (53%)
Query: 54 KDNLLVEREELFLKDDSVRPGILVLINEEDWELHGQLNYELKE 96
++ + VE EE+ + ++ + + ++D + G+ ELKE
Sbjct: 415 REEIKVEHEEIIVSQETEEEKSIAVSKDDDGQSDGKQTIELKE 457
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.139 0.411
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,467,129
Number of Sequences: 37544
Number of extensions: 128525
Number of successful extensions: 282
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 273
Number of HSP's gapped (non-prelim): 17
length of query: 109
length of database: 14,793,348
effective HSP length: 72
effective length of query: 37
effective length of database: 12,090,180
effective search space: 447336660
effective search space used: 447336660
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)
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