GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001700-TA|BGIBMGA001700-PA|IPR003749|ThiamineS
         (109 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   2.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   4.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   4.4  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 2.5
 Identities = 6/15 (40%), Positives = 11/15 (73%)

Query: 37   PDSQNQNWTLKELLI 51
            PD+ ++NWT K + +
Sbjct: 1147 PDTDSENWTPKMMAV 1161


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 4.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 52  WLKDNLLVEREELFLKDDSVR 72
           WLKD   +  EE  L+ +SV+
Sbjct: 341 WLKDGKPLGLEEAVLRIESVK 361


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 4.4
 Identities = 12/44 (27%), Positives = 20/44 (45%)

Query: 53  LKDNLLVEREELFLKDDSVRPGILVLINEEDWELHGQLNYELKE 96
           +KDNLL+      +  D+     LV I    ++ +   N E +E
Sbjct: 214 MKDNLLLYNHARLMSQDNHSKEYLVSIMFSHYDRNNNGNLEREE 257


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.139    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,992
Number of Sequences: 429
Number of extensions: 1221
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 109
length of database: 140,377
effective HSP length: 50
effective length of query: 59
effective length of database: 118,927
effective search space:  7016693
effective search space used:  7016693
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.7 bits)
S2: 39 (19.8 bits)