GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001699-TA|BGIBMGA001699-PA|IPR003590|Leucine-rich
repeat, ribonuclease inhibitor subtype, IPR009109|Ran-GTPase
activating protein 1, C-terminal, IPR001611|Leucine-rich repeat
         (542 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1...   124   2e-29

>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 386

 Score =  124 bits (300), Expect = 2e-29
 Identities = 89/262 (33%), Positives = 120/262 (45%), Gaps = 10/262 (3%)

Query: 27  GKSLKLD--TAKDAQQIVDAINKCPNLQYLALTGNTLGVTAAHAISKALESHPELKIARF 84
           GKSLKLD  T +D + +   + +  +++ + L+GNT+G  AA  +S+ + S  +L+IA F
Sbjct: 8   GKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 67

Query: 85  SDMFTGRMKTEIPPALSALGDGMIAAGARLAVLDLSDNAFGPIGVEGLAKLLQSDVCSDX 144
           SD+FTGR+K EIP AL  L   ++    +L  + LSDNAFGP   E L   L      + 
Sbjct: 68  SDIFTGRVKDEIPEALRLLLQALLKC-PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEH 126

Query: 145 XXXXXX----XXXXXITGGXXXXXXXXXXXXXXXV--FIAGRNRLENDGATALAKVFQEM 198
                          I                  +   I GRNRLEN      AK FQ  
Sbjct: 127 LYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 186

Query: 199 GSLEEIAMPQNGIYHVGIT-ALSEAFKHNPALNHLNLNDNTXXXXXXXXXXXXLPRLKNL 257
             L  + M QNGI   GI   L E   +   L  L+L DNT            L    NL
Sbjct: 187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL 246

Query: 258 KSINFGDCLLKSRGARALAKAF 279
           + +   DCLL +RGA A+  AF
Sbjct: 247 RELGLNDCLLSARGAAAVVDAF 268



 Score = 30.3 bits (65), Expect = 0.71
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 25  FSGKSLKLDTAKDAQQIVDAINKCPNLQYLALTGNTLGVTAAHAISKALESHPELK 80
           F+G+ +K +  +  + ++ A+ KCP L  + L+ N  G TA   +   L  H  L+
Sbjct: 71  FTGR-VKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125



 Score = 29.5 bits (63), Expect = 1.2
 Identities = 16/57 (28%), Positives = 25/57 (43%)

Query: 201 LEEIAMPQNGIYHVGITALSEAFKHNPALNHLNLNDNTXXXXXXXXXXXXLPRLKNL 257
           L+ + +  N   H+G +AL+ A K  P L  L LND                +L+N+
Sbjct: 218 LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENI 274



 Score = 26.6 bits (56), Expect = 8.8
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 41  IVDAINKCPNLQYLALTGNTLGVTAAHAISKALESHPELKIARFSD-MFTGRMKTEIPPA 99
           +++ +  C  L+ L L  NT     + A++ AL+S P L+    +D + + R    +  A
Sbjct: 208 LLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA 267

Query: 100 LSAL 103
            S L
Sbjct: 268 FSKL 271


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.134    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,913,379
Number of Sequences: 5004
Number of extensions: 65572
Number of successful extensions: 164
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 155
Number of HSP's gapped (non-prelim): 7
length of query: 542
length of database: 2,362,478
effective HSP length: 76
effective length of query: 466
effective length of database: 1,982,174
effective search space: 923693084
effective search space used: 923693084
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)