Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001699-TA|BGIBMGA001699-PA|IPR003590|Leucine-rich
repeat, ribonuclease inhibitor subtype, IPR009109|Ran-GTPase
activating protein 1, C-terminal, IPR001611|Leucine-rich repeat
(542 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0263 + 26752759-26754393 73 4e-13
06_01_0928 - 7159857-7159922,7159923-7160024,7160126-7160206,716... 40 0.005
12_01_0772 - 7016864-7017012,7017114-7017262,7017346-7017489,701... 39 0.012
06_01_0083 - 659510-661267,661577-662384,662700-663646 33 0.58
01_01_0363 + 2850954-2853675,2853819-2854225 33 0.76
08_01_0327 - 2942640-2943456,2944386-2944515,2944679-2944811 32 1.0
06_03_1222 - 28521799-28521900,28521952-28522029,28522292-285243... 32 1.0
06_03_1214 + 28469848-28473048 31 2.3
05_04_0287 + 19837262-19837552,19837672-19837971,19838120-19838212 30 4.1
07_03_1143 - 24294516-24294528,24294656-24297926,24298011-24298056 30 5.4
07_01_0159 - 1116786-1117153,1117251-1119936 29 7.1
05_06_0133 + 25905455-25905545,25905650-25906202,25906310-259068... 29 7.1
10_06_0165 + 11380807-11383585,11383628-11383734,11383782-11384018 29 9.4
09_04_0524 + 18321110-18323978,18324098-18324576 29 9.4
04_04_1634 + 34937087-34937198,34937652-34937790,34938263-349383... 29 9.4
>05_06_0263 + 26752759-26754393
Length = 544
Score = 73.3 bits (172), Expect = 4e-13
Identities = 71/292 (24%), Positives = 112/292 (38%), Gaps = 8/292 (2%)
Query: 12 VLDEPAQPETGV-DFSGKSLKLDTAKDAQQIVDAINKCPNL-QYLALTGNTLGVTAAHAI 69
V D P +P V D SG A +A++++ + K N + + + + G+ AA+
Sbjct: 114 VADTPLEPADSVFDISGGKRAFIEADEAKELLSPLIKPGNAYKRICFSNRSFGIGAANVA 173
Query: 70 SKALES-HPELKIARFSDMFTGRMKTEIPPALSALGDGMIAAGARLAVLDLSDNAFGPIG 128
LES +L SD GR + E + + GA L L++SDNA G G
Sbjct: 174 GPILESIKKQLTEVDISDFVAGRPEDEALDVMRIFSKAL--EGAVLRYLNISDNALGEKG 231
Query: 129 VEGLAKLLQSDVCSDXXXXXXXXXXXXITGGXXXXXXXXXXXXXXXVFIAGRNRLENDGA 188
V +LL+S D + N ++GA
Sbjct: 232 VRAFEELLKSQ---DNLEELYVMNDGISEEAAQALSELIPSTEKLKILHFHNNMTGDEGA 288
Query: 189 TALAKVFQEMGSLEEIAMPQNGIYHVGITALSEAFKHNPALNHLNLNDNTXXXXXXXXXX 248
+A++ + +LE I G AL+EA L L+L DN
Sbjct: 289 MFIAEMVKRSPNLESFRCSATRIGSDGGVALAEALGTCTRLKKLDLRDNLFGVEAGLALS 348
Query: 249 XXLPRLKNLKSINFGDCLLKSRGARALAKAFKGNSLLLEVRNSLGNAANKKS 300
L +L +L + D L+++G A+ K ++ LEV GN N K+
Sbjct: 349 KTLSKLPDLVELYLSDLNLENKGTVAIINTLKQSAPQLEVLEMAGNEINAKA 400
Score = 36.7 bits (81), Expect = 0.047
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 181 NRLENDGATALAKVFQE-MGSLEEIAMPQNGIYHVGITALSEAFKHNPALNHLNLNDN 237
N L++DGA +AK ++ L+E+ + N + VG ++A + P LN+N N
Sbjct: 422 NELKDDGAVVIAKSLEDGHQDLKELDVSTNMLQRVGARCFAQAIANKPGFVQLNINGN 479
Score = 33.5 bits (73), Expect = 0.44
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
Query: 41 IVDAINKCPNLQYLALTGNTLGVTAAHAISKALESHPELKIARFSDMFTGRMKTEIPPAL 100
+ +A+ C L+ L L N GV A A+SK L P+L SD+ T
Sbjct: 319 LAEALGTCTRLKKLDLRDNLFGVEAGLALSKTLSKLPDLVELYLSDLNLENKGT------ 372
Query: 101 SALGDGMIAAGARLAVLDLSDNAFGPIGVEGLAKLL 136
A+ + + + +L VL+++ N + LA+ L
Sbjct: 373 VAIINTLKQSAPQLEVLEMAGNEINAKASQALAECL 408
>06_01_0928 -
7159857-7159922,7159923-7160024,7160126-7160206,
7160289-7160384,7160462-7160566,7160648-7160722,
7161372-7161431,7161960-7162090,7162175-7162250,
7163390-7163459,7163603-7163664,7163788-7163871,
7163973-7164047,7164448-7164585,7164733-7164791,
7164910-7165123,7167996-7168091,7168701-7169639
Length = 842
Score = 39.9 bits (89), Expect = 0.005
Identities = 56/265 (21%), Positives = 97/265 (36%), Gaps = 16/265 (6%)
Query: 23 VDFSGKSLKLDTAKDAQQIVDAINKCPNLQYLALTGNTLGVTAAHAISKALESHPELKIA 82
VDFSG + TA + + L+ L L+GN +G A +S L + ++
Sbjct: 441 VDFSGNGI---TAVGIEAFDGILQINTALKSLNLSGNAIGDEGAKCLSDILVENVGIQKL 497
Query: 83 RFSDMFTGRMKTEIPPALSALGDGMIAAGARLAVLDLSDNAFGPIGVEGLAK-LLQSDVC 141
+ G A+ D M+ + L LS+N G +A+ LL+++V
Sbjct: 498 LLNSTNIG------DEGAKAISD-MLKKNKTIRTLQLSNNTIEYSGFASIAEALLENNVL 550
Query: 142 SDXXXXXXXXXXXXITGGXXXXXXXXXXXXXXXVFIAGRNRLENDGATALAKVFQ-EMGS 200
G + + G N N+G AL G
Sbjct: 551 RSLFVNGNYGGPL---GASSLAKGILGNKTLRELHLHG-NGFGNEGVRALMSALSAHKGK 606
Query: 201 LEEIAMPQNGIYHVGITALSEAFKHNPALNHLNLNDNTXXXXXXXXXXXXLPRLKNLKSI 260
+ + + N I G ++E K +L L+L N L + K + ++
Sbjct: 607 ITVLDIGNNNITSEGSLHVAEFIKRTKSLLWLSLYMNDISDEGAEKVADALKQNKTISTV 666
Query: 261 NFGDCLLKSRGARALAKAFKGNSLL 285
+ G + S+G A+A+ K NS++
Sbjct: 667 DLGGNNIHSKGVSAIAETLKDNSVV 691
Score = 39.1 bits (87), Expect = 0.009
Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 1/111 (0%)
Query: 175 VFIAGRNRLENDGATALAKVFQEMGSLEEIAMPQNGIYHVGITALSEAFKHNPALNHLNL 234
V +AGR + ++G LA+ S EE+ NGI VGI A + N AL LNL
Sbjct: 413 VNMAGR-QFGDEGLFFLAESLAYNKSAEEVDFSGNGITAVGIEAFDGILQINTALKSLNL 471
Query: 235 NDNTXXXXXXXXXXXXLPRLKNLKSINFGDCLLKSRGARALAKAFKGNSLL 285
+ N L ++ + + GA+A++ K N +
Sbjct: 472 SGNAIGDEGAKCLSDILVENVGIQKLLLNSTNIGDEGAKAISDMLKKNKTI 522
Score = 35.9 bits (79), Expect = 0.082
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 7/124 (5%)
Query: 187 GATALAKVFQEMGSLEEIAMPQNGIYHVGITALSEAFK-HNPALNHLNLNDNTXXXXXXX 245
GA++LAK +L E+ + NG + G+ AL A H + L++ +N
Sbjct: 564 GASSLAKGILGNKTLRELHLHGNGFGNEGVRALMSALSAHKGKITVLDIGNNNITSEGSL 623
Query: 246 XXXXXLPRLKNLKSINFGDCLLKSRGARALAKAFKGNSLLLEVR------NSLGNAANKK 299
+ R K+L ++ + GA +A A K N + V +S G +A +
Sbjct: 624 HVAEFIKRTKSLLWLSLYMNDISDEGAEKVADALKQNKTISTVDLGGNNIHSKGVSAIAE 683
Query: 300 SLKD 303
+LKD
Sbjct: 684 TLKD 687
Score = 33.9 bits (74), Expect = 0.33
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 1/115 (0%)
Query: 181 NRLENDGATALAKVFQEMGSLEEIAMPQNGIYHVGITALSEAFKHNPALNHLNLNDNTXX 240
N + +G AL V + G ++ + + I G +++ K+N L+ L+L N
Sbjct: 699 NPIGPEGVKALCDVLKFNGKIQTLKLGWCQIGVSGAEFVADCLKYNTTLSTLDLRANGLG 758
Query: 241 XXXXXXXXXXLPRL-KNLKSINFGDCLLKSRGARALAKAFKGNSLLLEVRNSLGN 294
+ ++L S++ G ++ GA ALA+A K N L +L N
Sbjct: 759 DDGAICLARSFKIINESLTSLDLGFNEIRDDGAFALAQALKANEDLAVTSLNLAN 813
>12_01_0772 -
7016864-7017012,7017114-7017262,7017346-7017489,
7017549-7017719,7017907-7018020,7018115-7018215,
7018296-7018416,7018601-7018830,7019203-7019265,
7019528-7019570,7019860-7019953,7020428-7020501,
7020616-7020744,7020940-7021017,7021353-7021639
Length = 648
Score = 38.7 bits (86), Expect = 0.012
Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 5/116 (4%)
Query: 181 NRLENDGATALAKVFQEMGS-LEEIAMPQNGIYHVGITALSEAFKHNPALNHLNLNDNTX 239
N L + A ALAK +GS + E+ + G +G L EA + AL+H+N++ N
Sbjct: 498 NHLGSSVAVALAKF---LGSGVRELNIEDIGFGPLGFQILEEALPADVALSHINVSKNRG 554
Query: 240 XXXXXXXXXXXLPRLKNLKSINFGDCLLKSRGARALAKAFK-GNSLLLEVRNSLGN 294
+ + L S+N G LL + K N+ LE + +GN
Sbjct: 555 GIRAARFVSRLIKQAPGLVSVNAGSNLLPPESMEVICDVLKQKNTCNLERLDLMGN 610
>06_01_0083 - 659510-661267,661577-662384,662700-663646
Length = 1170
Score = 33.1 bits (72), Expect = 0.58
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 19 PETGVDFSGKSLKLDTAKDAQQIVDAINKCPNLQYLA---LTGNTLGVTAAHAISKALE- 74
PE+G +F + + D Q + AI+ QY++ TG VT AH + K +E
Sbjct: 72 PESGQEFLNYHVTIPATPDNQPMDPAISARVEEQYVSNSLFTGGFNSVTRAHLMDKVIES 131
Query: 75 --SHPELKIARFS 85
SHP++ A+ S
Sbjct: 132 EASHPQMAGAKGS 144
>01_01_0363 + 2850954-2853675,2853819-2854225
Length = 1042
Score = 32.7 bits (71), Expect = 0.76
Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 8/105 (7%)
Query: 1 MATFDLNSLNTVLDEPAQPETGVDFSGKSLKLDTAKDAQQIVDAINKCPNLQYLALTGNT 60
++ F + S NT L P E G + S++L + + QI D+I C L+YL L N+
Sbjct: 479 LSWFLILSDNT-LSGPIPSEVGTLVNLNSIELSGNQLSDQIPDSIGNCEVLEYLLLDSNS 537
Query: 61 LGVTAAHAISKALESHPELKIARFSDMFTGRMKTEIPPALSALGD 105
+ +++K LK ++ + IP A+ ++G+
Sbjct: 538 FEGSIPQSLTK-------LKGIAILNLTMNKFSGSIPNAIGSMGN 575
>08_01_0327 - 2942640-2943456,2944386-2944515,2944679-2944811
Length = 359
Score = 32.3 bits (70), Expect = 1.0
Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 1/85 (1%)
Query: 31 KLDTAKDAQQIVDAI-NKCPNLQYLALTGNTLGVTAAHAISKALESHPELKIARFSDMFT 89
KL T D+ V + + CP + T G + S + +H F FT
Sbjct: 176 KLATGDDSPPAVPGLPHHCPLFMFDTTTTGAGGAISPPPPSSLIPTHLHHHHHPFIASFT 235
Query: 90 GRMKTEIPPALSALGDGMIAAGARL 114
M + P L L DGM A GA +
Sbjct: 236 AAMAADTPSYLPPLVDGMAAMGAAM 260
>06_03_1222 -
28521799-28521900,28521952-28522029,28522292-28524335,
28525188-28525303
Length = 779
Score = 32.3 bits (70), Expect = 1.0
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 28 KSLKLDTAKDAQQIVDAINKCPNLQYLALTGNTLGVTAAHAISKALESHPELKIARFS-D 86
+ L+LD + ++ A+ C NL+YL+L N +SK + L+IA FS +
Sbjct: 310 EELRLDNNNMSGELPSAVGNCTNLRYLSLRNNKF----VGDLSKVNFTRLNLRIADFSIN 365
Query: 87 MFTGRMKTEI 96
FTG + I
Sbjct: 366 NFTGTVPESI 375
>06_03_1214 + 28469848-28473048
Length = 1066
Score = 31.1 bits (67), Expect = 2.3
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 28 KSLKLDTAKDAQQIVDAINKCPNLQYLALTGNTLGVTAAHAISKALESHPELKIARFS-D 86
+ L+LD + ++ A+ C NL+YL+L N +SK + L+IA FS +
Sbjct: 313 EELRLDNNNMSGELPSALGNCTNLRYLSLRNNKF----VGDLSKVNFTWLNLRIADFSIN 368
Query: 87 MFTGRMKTEI 96
FTG + I
Sbjct: 369 NFTGTVPESI 378
>05_04_0287 + 19837262-19837552,19837672-19837971,19838120-19838212
Length = 227
Score = 30.3 bits (65), Expect = 4.1
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 35 AKDAQQIVDAINKCPNLQYLALTGNTLGVTAAHAISKALE-SHPELK 80
AK+AQ + + + +L+ L L N L A I+KALE H +LK
Sbjct: 136 AKEAQALAECLTTLQSLKKLTLAENGLKDDGAVVIAKALEDGHQDLK 182
>07_03_1143 - 24294516-24294528,24294656-24297926,24298011-24298056
Length = 1109
Score = 29.9 bits (64), Expect = 5.4
Identities = 32/98 (32%), Positives = 40/98 (40%), Gaps = 15/98 (15%)
Query: 28 KSLKLDTAKDAQQIVDAINKCPNLQYLALTGNTLGVTAAHAISKALESHPELKIARFSDM 87
+SL L A + D+I C NL YL+L GN A IS + EL +
Sbjct: 240 RSLDLSANHFAGEFPDSIASCSNLTYLSLWGNGF----AGKISAGI---GELAGLETLIL 292
Query: 88 FTGRMKTEIPPALSALGDGMIAAGARLAVLDLSDNAFG 125
R IPP L+ L LD+S NAFG
Sbjct: 293 GKNRFDRRIPPELTNC--------TSLQFLDMSTNAFG 322
>07_01_0159 - 1116786-1117153,1117251-1119936
Length = 1017
Score = 29.5 bits (63), Expect = 7.1
Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 43 DAINKCPNLQYLALTGNTLGVTAAHAISKALESHPELKIARFSDMFTGRMKTEIPPALSA 102
D N PNLQ L L GN LG ++ A E L ++ ++ FTGR IPP+L
Sbjct: 266 DLGNFIPNLQQLYLGGNMLGGHIPDSLGNATELQ-WLDLS-YNQGFTGR----IPPSLGK 319
Query: 103 L 103
L
Sbjct: 320 L 320
>05_06_0133 +
25905455-25905545,25905650-25906202,25906310-25906806,
25906905-25907043,25907182-25907253,25907344-25907415,
25907503-25907583,25907899-25908065,25908148-25908416,
25908512-25908638,25908752-25908820,25908928-25909120,
25909215-25909707
Length = 940
Score = 29.5 bits (63), Expect = 7.1
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 28 KSLKLDTAKDAQQIVDAINKCPNLQYLALTGNTLGVTAAHAISKALE 74
++L L K I DA+++ P+L +L LTGN L + + K ++
Sbjct: 449 QNLDLSNNKLTGPIPDALSQLPSLTFLDLTGNQLSGSIPSGLLKRIQ 495
>10_06_0165 + 11380807-11383585,11383628-11383734,11383782-11384018
Length = 1040
Score = 29.1 bits (62), Expect = 9.4
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 30 LKLDTAKDAQQIVDAINKCPNLQYLALTGNTLGVTAAHAISK 71
L + K A + DAI+ C +L L + GN+L T +ISK
Sbjct: 525 LYMHNNKLAGALPDAISSCQSLMELRMDGNSLNSTIPVSISK 566
>09_04_0524 + 18321110-18323978,18324098-18324576
Length = 1115
Score = 29.1 bits (62), Expect = 9.4
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 41 IVDAINKCPNLQYLALTGNTLGVTAAHAISKALE----SHPELKIARFSDMFTGRMKTEI 96
+ AI+ C +L++L L N L + + ++L+ S +L A S + T++
Sbjct: 509 VPSAISGCSSLEFLDLHSNALSGSLPETLPRSLQLIDVSDNQLAGALSSSIGLMPELTKL 568
Query: 97 PPALSALGDGM---IAAGARLAVLDLSDNAFGPI 127
+ L G+ I + +L +LDL DNAF +
Sbjct: 569 YLGKNRLAGGIPPEIGSCQKLQLLDLGDNAFSGV 602
>04_04_1634 +
34937087-34937198,34937652-34937790,34938263-34938334,
34938414-34938546,34938591-34938730,34939478-34939585,
34939650-34939720,34940297-34940545,34940618-34940823,
34940894-34941026,34941099-34941101,34941136-34941293,
34941420-34941683,34941869-34942114
Length = 677
Score = 29.1 bits (62), Expect = 9.4
Identities = 29/86 (33%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 29 SLKLDTAKDAQQIVDAINKCPNLQYLALTGNTLGVTAAHAISKALESHPELKIARFSDMF 88
SLKL + I + + LQ L L N L T I K L S L+ R D+
Sbjct: 83 SLKLSNSSLKGFIAPELGQLSFLQELYLDRNMLFGT----IPKQLGS---LRNLRVLDLG 135
Query: 89 TGRMKTEIPPALSALGDGMIAAGARL 114
R+ IPP L+ L G +GA L
Sbjct: 136 VNRLTGPIPPELAGLSSGFPVSGASL 161
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.134 0.384
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,481,855
Number of Sequences: 37544
Number of extensions: 430660
Number of successful extensions: 1296
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1271
Number of HSP's gapped (non-prelim): 34
length of query: 542
length of database: 14,793,348
effective HSP length: 86
effective length of query: 456
effective length of database: 11,564,564
effective search space: 5273441184
effective search space used: 5273441184
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 62 (29.1 bits)
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