GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001699-TA|BGIBMGA001699-PA|IPR003590|Leucine-rich
repeat, ribonuclease inhibitor subtype, IPR009109|Ran-GTPase
activating protein 1, C-terminal, IPR001611|Leucine-rich repeat
         (542 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            27   1.7  
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    26   2.2  

>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 11/31 (35%), Positives = 19/31 (61%)

Query: 275 LAKAFKGNSLLLEVRNSLGNAANKKSLKDKL 305
           L K F+ + + + +RN LG     K++K+KL
Sbjct: 713 LDKEFEDDRVAITIRNLLGGTDGPKAMKEKL 743


>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1168

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 13/39 (33%), Positives = 19/39 (48%)

Query: 6   LNSLNTVLDEPAQPETGVDFSGKSLKLDTAKDAQQIVDA 44
           LN LN  +++P  P+      G      T +  QQ+VDA
Sbjct: 517 LNRLNEYIEDPESPQLSEQQFGFRRGRSTLQAIQQVVDA 555


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.317    0.134    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 425,568
Number of Sequences: 2123
Number of extensions: 14458
Number of successful extensions: 66
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64
Number of HSP's gapped (non-prelim): 2
length of query: 542
length of database: 516,269
effective HSP length: 67
effective length of query: 475
effective length of database: 374,028
effective search space: 177663300
effective search space used: 177663300
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 50 (24.2 bits)