GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001699-TA|BGIBMGA001699-PA|IPR003590|Leucine-rich
repeat, ribonuclease inhibitor subtype, IPR009109|Ran-GTPase
activating protein 1, C-terminal, IPR001611|Leucine-rich repeat
         (542 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061219-1|AAL28767.1|  596|Drosophila melanogaster LD16356p pro...   223   6e-58
AE014134-3098|AAF53801.1|  596|Drosophila melanogaster CG9999-PA...   223   6e-58
AF143860-1|AAD31518.1|  596|Drosophila melanogaster RanGAP protein.   221   2e-57
AE013599-481|AAF59205.2| 1399|Drosophila melanogaster CG1399-PB,...    38   0.035
AY058675-1|AAL13904.1|  772|Drosophila melanogaster LD38495p pro...    31   5.4  
AE014297-2112|AAF55252.2|  772|Drosophila melanogaster CG4221-PA...    31   5.4  
BT010264-1|AAQ23582.1| 1238|Drosophila melanogaster RE27764p pro...    30   7.1  
AE014296-3371|AAF51605.2| 1535|Drosophila melanogaster CG5195-PA...    30   7.1  

>AY061219-1|AAL28767.1|  596|Drosophila melanogaster LD16356p
           protein.
          Length = 596

 Score =  223 bits (544), Expect = 6e-58
 Identities = 127/297 (42%), Positives = 165/297 (55%), Gaps = 13/297 (4%)

Query: 1   MATFDLNSLNTVLDEPAQPETGVDFSGKSLKLDTAKDAQQIVDAINKCPNLQYLALTGNT 60
           M+TF+  S+   L +    E G+ F  K L  +TA D Q +VDA+NK   + YL L GNT
Sbjct: 1   MSTFNFASMAAQLGQ----EQGISFENKVLSWNTAADVQDVVDALNKQTTVHYLNLDGNT 56

Query: 61  LGVTAAHAISKALESHPELKIARFSDMFTGRMKTEIPPALSALGDGMIAAGARLAVLDLS 120
           LGV AA AI + L+ HPE + A + +MFTGR+ +EIP AL  LG  +I AGA+L VLDLS
Sbjct: 57  LGVEAAKAIGEGLKRHPEFRKALWKNMFTGRLISEIPEALKHLGAALIVAGAKLTVLDLS 116

Query: 121 DNAFGPIGVEGLAKLLQSDVCSDXXXXXXXXXXXXITGGXXXXXXXXXXXXXX------- 173
           DNA GP G+ GL +LL+S VC                GG                     
Sbjct: 117 DNALGPNGMRGLEELLRSPVCYSLQELLLCNCGLGPEGGSMLSRALIDLHANANKAGFPL 176

Query: 174 --XVFIAGRNRLENDGATALAKVFQEMGSLEEIAMPQNGIYHVGITALSEAFKHNPALNH 231
              VFI  RNRLE+ GAT +A  FQ + + EEI + QN IY  G+ AL+E+FKHNP L  
Sbjct: 177 QLRVFIGSRNRLEDAGATEMATAFQTLKTFEEIVLEQNSIYIEGVEALAESFKHNPHLRV 236

Query: 232 LNLNDNTXXXXXXXXXXXXLPRLKNLKSINFGDCLLKSRGARALAKAFKGNSLLLEV 288
           LN+NDNT            LP L  L+ ++FGDCL+K+ GA    +A +  +  LEV
Sbjct: 237 LNMNDNTLKSEGAEKIAEALPFLPLLREMSFGDCLIKTNGAYHFGEALERGNERLEV 293


>AE014134-3098|AAF53801.1|  596|Drosophila melanogaster CG9999-PA
           protein.
          Length = 596

 Score =  223 bits (544), Expect = 6e-58
 Identities = 127/297 (42%), Positives = 165/297 (55%), Gaps = 13/297 (4%)

Query: 1   MATFDLNSLNTVLDEPAQPETGVDFSGKSLKLDTAKDAQQIVDAINKCPNLQYLALTGNT 60
           M+TF+  S+   L +    E G+ F  K L  +TA D Q +VDA+NK   + YL L GNT
Sbjct: 1   MSTFNFASMAAQLGQ----EQGISFENKVLSWNTAADVQDVVDALNKQTTVHYLNLDGNT 56

Query: 61  LGVTAAHAISKALESHPELKIARFSDMFTGRMKTEIPPALSALGDGMIAAGARLAVLDLS 120
           LGV AA AI + L+ HPE + A + +MFTGR+ +EIP AL  LG  +I AGA+L VLDLS
Sbjct: 57  LGVEAAKAIGEGLKRHPEFRKALWKNMFTGRLISEIPEALKHLGAALIVAGAKLTVLDLS 116

Query: 121 DNAFGPIGVEGLAKLLQSDVCSDXXXXXXXXXXXXITGGXXXXXXXXXXXXXX------- 173
           DNA GP G+ GL +LL+S VC                GG                     
Sbjct: 117 DNALGPNGMRGLEELLRSPVCYSLQELLLCNCGLGPEGGSMLSRALIDLHANANKAGFPL 176

Query: 174 --XVFIAGRNRLENDGATALAKVFQEMGSLEEIAMPQNGIYHVGITALSEAFKHNPALNH 231
              VFI  RNRLE+ GAT +A  FQ + + EEI + QN IY  G+ AL+E+FKHNP L  
Sbjct: 177 QLRVFIGSRNRLEDAGATEMATAFQTLKTFEEIVLEQNSIYIEGVEALAESFKHNPHLRV 236

Query: 232 LNLNDNTXXXXXXXXXXXXLPRLKNLKSINFGDCLLKSRGARALAKAFKGNSLLLEV 288
           LN+NDNT            LP L  L+ ++FGDCL+K+ GA    +A +  +  LEV
Sbjct: 237 LNMNDNTLKSEGAEKIAEALPFLPLLREMSFGDCLIKTNGAYHFGEALERGNERLEV 293


>AF143860-1|AAD31518.1|  596|Drosophila melanogaster RanGAP protein.
          Length = 596

 Score =  221 bits (540), Expect = 2e-57
 Identities = 126/297 (42%), Positives = 165/297 (55%), Gaps = 13/297 (4%)

Query: 1   MATFDLNSLNTVLDEPAQPETGVDFSGKSLKLDTAKDAQQIVDAINKCPNLQYLALTGNT 60
           M+TF+  S+   L +    E G+ F  K L  +TA D Q +VDA+NK   + YL L GNT
Sbjct: 1   MSTFNFASMAAQLGQ----EQGISFENKVLSWNTAADVQDVVDALNKQTTVHYLNLDGNT 56

Query: 61  LGVTAAHAISKALESHPELKIARFSDMFTGRMKTEIPPALSALGDGMIAAGARLAVLDLS 120
           LGV AA AI + L+ HPE + A + +MFTGR+ +EIP AL  LG  +I AGA+L VLDLS
Sbjct: 57  LGVEAAKAIGEGLKRHPEFRKALWKNMFTGRLISEIPEALKHLGAALIVAGAKLTVLDLS 116

Query: 121 DNAFGPIGVEGLAKLLQSDVCSDXXXXXXXXXXXXITGGXXXXXXXXXXXXXX------- 173
           +NA GP G+ GL +LL+S VC                GG                     
Sbjct: 117 ENALGPNGMRGLEELLRSPVCYSLQELLLCNCGLGPEGGSMLSRALIDLHANANKAGFPL 176

Query: 174 --XVFIAGRNRLENDGATALAKVFQEMGSLEEIAMPQNGIYHVGITALSEAFKHNPALNH 231
              VFI  RNRLE+ GAT +A  FQ + + EEI + QN IY  G+ AL+E+FKHNP L  
Sbjct: 177 QLRVFIGSRNRLEDAGATEMATAFQTLKTFEEIVLEQNSIYIEGVEALAESFKHNPHLRV 236

Query: 232 LNLNDNTXXXXXXXXXXXXLPRLKNLKSINFGDCLLKSRGARALAKAFKGNSLLLEV 288
           LN+NDNT            LP L  L+ ++FGDCL+K+ GA    +A +  +  LEV
Sbjct: 237 LNMNDNTLKSEGAEKIAEALPFLPLLREMSFGDCLIKTNGAYHFGEALERGNERLEV 293


>AE013599-481|AAF59205.2| 1399|Drosophila melanogaster CG1399-PB,
           isoform B protein.
          Length = 1399

 Score = 37.9 bits (84), Expect = 0.035
 Identities = 37/179 (20%), Positives = 65/179 (36%), Gaps = 9/179 (5%)

Query: 53  YLALTGNTLGVTAAHAISKALESHPELKIARFSDMFTGRMKTEIPPALSALGDGMIAAGA 112
           YL L+ NTLG   AH +   +     +++ +  D+    +  E+ P L+A+         
Sbjct: 431 YLDLSSNTLGAQGAHVLESCIHG---VRVLQSLDISDNNLDAELAPVLTAISKNPSIRTL 487

Query: 113 RL--AVLDLSDNAFGPIGVEGLAKLLQSDVCSDXXXXXXXXXXXXITGGXXXXXXXXXXX 170
            L  ++  +      P+ ++ L  L+Q D   D            +              
Sbjct: 488 HLTRSLTGMKPKHIPPV-MDALVNLIQKD---DFPLVELVLSENKLKHDLHDFINALGSN 543

Query: 171 XXXXVFIAGRNRLENDGATALAKVFQEMGSLEEIAMPQNGIYHVGITALSEAFKHNPAL 229
                     N + + GA  LAK  Q    L  I M +NG+   G   +  A +HN ++
Sbjct: 544 QSLQKLDISGNFMGDVGARLLAKALQINNRLRTIYMDKNGVTLQGYADIVYALEHNHSM 602



 Score = 29.9 bits (64), Expect = 9.4
 Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 9/101 (8%)

Query: 41  IVDAINKCPNLQYLALTGNTLGVTAAHA--ISKALESHPELKIARFSDMFTG--RMKTEI 96
           ++ AI+K P+++ L LT +  G+   H   +  AL +  +       ++     ++K ++
Sbjct: 474 VLTAISKNPSIRTLHLTRSLTGMKPKHIPPVMDALVNLIQKDDFPLVELVLSENKLKHDL 533

Query: 97  PPALSALGDGMIAAGARLAVLDLSDNAFGPIGVEGLAKLLQ 137
              ++ALG         L  LD+S N  G +G   LAK LQ
Sbjct: 534 HDFINALGSNQ-----SLQKLDISGNFMGDVGARLLAKALQ 569


>AY058675-1|AAL13904.1|  772|Drosophila melanogaster LD38495p
           protein.
          Length = 772

 Score = 30.7 bits (66), Expect = 5.4
 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 2/31 (6%)

Query: 30  LKLDTAKDA--QQIVDAINKCPNLQYLALTG 58
           L+L T  D   Q +V+A+ KC NLQ+L +TG
Sbjct: 505 LQLQTCVDITNQALVEALTKCSNLQHLDVTG 535


>AE014297-2112|AAF55252.2|  772|Drosophila melanogaster CG4221-PA
           protein.
          Length = 772

 Score = 30.7 bits (66), Expect = 5.4
 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 2/31 (6%)

Query: 30  LKLDTAKDA--QQIVDAINKCPNLQYLALTG 58
           L+L T  D   Q +V+A+ KC NLQ+L +TG
Sbjct: 505 LQLQTCVDITNQALVEALTKCSNLQHLDVTG 535


>BT010264-1|AAQ23582.1| 1238|Drosophila melanogaster RE27764p
           protein.
          Length = 1238

 Score = 30.3 bits (65), Expect = 7.1
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 177 IAGRNRLENDGATALAKVFQEMGSLEEIAMPQNGIYHVGITALSEAFKHNPALNHLNLND 236
           + G +  +N  A   +++   + SL  + + +NG+    I     +F+HNP L  LN++ 
Sbjct: 432 LKGLDLAQNQFARVDSQLLAGLPSLRRLDLSENGL----IELAPNSFRHNPLLETLNISS 487

Query: 237 N 237
           N
Sbjct: 488 N 488


>AE014296-3371|AAF51605.2| 1535|Drosophila melanogaster CG5195-PA
           protein.
          Length = 1535

 Score = 30.3 bits (65), Expect = 7.1
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 177 IAGRNRLENDGATALAKVFQEMGSLEEIAMPQNGIYHVGITALSEAFKHNPALNHLNLND 236
           + G +  +N  A   +++   + SL  + + +NG+    I     +F+HNP L  LN++ 
Sbjct: 432 LKGLDLAQNQFARVDSQLLAGLPSLRRLDLSENGL----IELAPNSFRHNPLLETLNISS 487

Query: 237 N 237
           N
Sbjct: 488 N 488


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.317    0.134    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,504,410
Number of Sequences: 52641
Number of extensions: 702669
Number of successful extensions: 1902
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1884
Number of HSP's gapped (non-prelim): 24
length of query: 542
length of database: 24,830,863
effective HSP length: 88
effective length of query: 454
effective length of database: 20,198,455
effective search space: 9170098570
effective search space used: 9170098570
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 64 (29.9 bits)