Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001699-TA|BGIBMGA001699-PA|IPR003590|Leucine-rich
repeat, ribonuclease inhibitor subtype, IPR009109|Ran-GTPase
activating protein 1, C-terminal, IPR001611|Leucine-rich repeat
(542 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L23651-7|AAM22042.1| 926|Caenorhabditis elegans Associated with... 190 2e-48
L23651-6|AAK84496.3| 960|Caenorhabditis elegans Associated with... 190 2e-48
Z71264-1|CAA95828.1| 998|Caenorhabditis elegans Hypothetical pr... 35 0.13
AL110478-5|CAB76746.1| 388|Caenorhabditis elegans Hypothetical ... 30 4.8
AF063007-6|AAC16427.2| 523|Caenorhabditis elegans Taf (tbp-asso... 30 4.8
>L23651-7|AAM22042.1| 926|Caenorhabditis elegans Associated with
ran (nuclear import/export) function protein 2, isoform
b protein.
Length = 926
Score = 190 bits (463), Expect = 2e-48
Identities = 110/259 (42%), Positives = 139/259 (53%), Gaps = 10/259 (3%)
Query: 23 VDFSGKSLKLDTAKDAQQIVDAINKCPNLQYLALTGNTLGVTAAHAISKALESHPELKIA 82
V F KSLKLDTA+ A+ +V I +++ L L GNTLG+ A + I+KALESHPEL+
Sbjct: 413 VSFLDKSLKLDTAESAEPVVKVIAAASSMKALELRGNTLGIAAGNVIAKALESHPELERC 472
Query: 83 RFSDMFTGRMKTEIPPALSALGDGMIAAGARLAVLDLSDNAFGPIGVEGLAKLLQSDVCS 142
+SD+FTGR+K EIPP L ALG M+ AG ++ LDLSDNAFGPIG + L LL+S
Sbjct: 473 LWSDLFTGRLKNEIPPILEALGKAMMTAGCKIKELDLSDNAFGPIGADALKDLLESPSSF 532
Query: 143 DXXXXXXXXXXXXITGGXXXXXXXXXXXXXXXV----------FIAGRNRLENDGATALA 192
I G V FIAGRNRLEN GA ALA
Sbjct: 533 SLEVLKLNNNGLGIGGKQIAKSLTECLRKSIAVGGENRLRLKTFIAGRNRLENPGAHALA 592
Query: 193 KVFQEMGSLEEIAMPQNGIYHVGITALSEAFKHNPALNHLNLNDNTXXXXXXXXXXXXLP 252
F+ + ++E + QNGI+ GI AL A KHN L +L L DNT L
Sbjct: 593 ATFKALETVEWFDVRQNGIHEEGIRALVAALKHNRNLRYLWLEDNTVLPKGAKALAKTLE 652
Query: 253 RLKNLKSINFGDCLLKSRG 271
L+ +N DCL++ G
Sbjct: 653 SWPKLEVLNLSDCLIRDAG 671
Score = 163 bits (395), Expect = 4e-40
Identities = 97/261 (37%), Positives = 134/261 (51%), Gaps = 8/261 (3%)
Query: 23 VDFSGKSLKLDTAKDAQQIVDAINKCPNLQYLALTGNTLGVTAAHAISKALESHPELKIA 82
+ F GK LKLDT ++ +++D I K NL+ L GNTL V A I+++L++ ELK
Sbjct: 7 LSFFGKQLKLDTEEEISKVIDQIRKHLNLEVLDFRGNTLSVLAGKLIAESLKTRRELKEC 66
Query: 83 RFSDMFTGRMKTEIPPALSALGDGMIAAGARLAVLDLSDNAFGPIGVEGLAKLLQSDVCS 142
+SDMFTGR+K EIP L ALG+ + A+G RL LDLSDNAFG L LQS
Sbjct: 67 IWSDMFTGRLKDEIPLVLDALGEALTASGCRLTTLDLSDNAFGAGLSTSLYNFLQSPALY 126
Query: 143 DXXXXXXXXXXXXITGGXXXXXXXXXXXXXXXV--------FIAGRNRLENDGATALAKV 194
+ G F+ GRNRLE + AL+
Sbjct: 127 SLENLILNNNGLGLAGKTVGKALCSLIDASKKAGTPLKLKKFVCGRNRLEVESTIALSDA 186
Query: 195 FQEMGSLEEIAMPQNGIYHVGITALSEAFKHNPALNHLNLNDNTXXXXXXXXXXXXLPRL 254
F ++G+LEEI +PQNGI GI AL+EAF+ N L +++NDN L L
Sbjct: 187 FIKLGTLEEIRLPQNGIRDDGIIALAEAFRMNKKLRIIDINDNFCCPEGAIQISEVLSDL 246
Query: 255 KNLKSINFGDCLLKSRGARAL 275
+ ++ ++ GDC+ G A+
Sbjct: 247 QFIEVLDLGDCVCDDPGVLAI 267
>L23651-6|AAK84496.3| 960|Caenorhabditis elegans Associated with
ran (nuclear import/export) function protein 2, isoform
a protein.
Length = 960
Score = 190 bits (463), Expect = 2e-48
Identities = 110/259 (42%), Positives = 139/259 (53%), Gaps = 10/259 (3%)
Query: 23 VDFSGKSLKLDTAKDAQQIVDAINKCPNLQYLALTGNTLGVTAAHAISKALESHPELKIA 82
V F KSLKLDTA+ A+ +V I +++ L L GNTLG+ A + I+KALESHPEL+
Sbjct: 450 VSFLDKSLKLDTAESAEPVVKVIAAASSMKALELRGNTLGIAAGNVIAKALESHPELERC 509
Query: 83 RFSDMFTGRMKTEIPPALSALGDGMIAAGARLAVLDLSDNAFGPIGVEGLAKLLQSDVCS 142
+SD+FTGR+K EIPP L ALG M+ AG ++ LDLSDNAFGPIG + L LL+S
Sbjct: 510 LWSDLFTGRLKNEIPPILEALGKAMMTAGCKIKELDLSDNAFGPIGADALKDLLESPSSF 569
Query: 143 DXXXXXXXXXXXXITGGXXXXXXXXXXXXXXXV----------FIAGRNRLENDGATALA 192
I G V FIAGRNRLEN GA ALA
Sbjct: 570 SLEVLKLNNNGLGIGGKQIAKSLTECLRKSIAVGGENRLRLKTFIAGRNRLENPGAHALA 629
Query: 193 KVFQEMGSLEEIAMPQNGIYHVGITALSEAFKHNPALNHLNLNDNTXXXXXXXXXXXXLP 252
F+ + ++E + QNGI+ GI AL A KHN L +L L DNT L
Sbjct: 630 ATFKALETVEWFDVRQNGIHEEGIRALVAALKHNRNLRYLWLEDNTVLPKGAKALAKTLE 689
Query: 253 RLKNLKSINFGDCLLKSRG 271
L+ +N DCL++ G
Sbjct: 690 SWPKLEVLNLSDCLIRDAG 708
Score = 163 bits (395), Expect = 4e-40
Identities = 97/261 (37%), Positives = 134/261 (51%), Gaps = 8/261 (3%)
Query: 23 VDFSGKSLKLDTAKDAQQIVDAINKCPNLQYLALTGNTLGVTAAHAISKALESHPELKIA 82
+ F GK LKLDT ++ +++D I K NL+ L GNTL V A I+++L++ ELK
Sbjct: 44 LSFFGKQLKLDTEEEISKVIDQIRKHLNLEVLDFRGNTLSVLAGKLIAESLKTRRELKEC 103
Query: 83 RFSDMFTGRMKTEIPPALSALGDGMIAAGARLAVLDLSDNAFGPIGVEGLAKLLQSDVCS 142
+SDMFTGR+K EIP L ALG+ + A+G RL LDLSDNAFG L LQS
Sbjct: 104 IWSDMFTGRLKDEIPLVLDALGEALTASGCRLTTLDLSDNAFGAGLSTSLYNFLQSPALY 163
Query: 143 DXXXXXXXXXXXXITGGXXXXXXXXXXXXXXXV--------FIAGRNRLENDGATALAKV 194
+ G F+ GRNRLE + AL+
Sbjct: 164 SLENLILNNNGLGLAGKTVGKALCSLIDASKKAGTPLKLKKFVCGRNRLEVESTIALSDA 223
Query: 195 FQEMGSLEEIAMPQNGIYHVGITALSEAFKHNPALNHLNLNDNTXXXXXXXXXXXXLPRL 254
F ++G+LEEI +PQNGI GI AL+EAF+ N L +++NDN L L
Sbjct: 224 FIKLGTLEEIRLPQNGIRDDGIIALAEAFRMNKKLRIIDINDNFCCPEGAIQISEVLSDL 283
Query: 255 KNLKSINFGDCLLKSRGARAL 275
+ ++ ++ GDC+ G A+
Sbjct: 284 QFIEVLDLGDCVCDDPGVLAI 304
>Z71264-1|CAA95828.1| 998|Caenorhabditis elegans Hypothetical
protein K07G5.1 protein.
Length = 998
Score = 35.1 bits (77), Expect = 0.13
Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 3/97 (3%)
Query: 182 RLENDGATALAKVFQEMGSLEEIAMPQNGIYHVGITALSEAFKHNP--ALNHLNLNDNTX 239
R+ ++ + V ++ +L+++ + + IT L+ AF +N L +L+L+ N
Sbjct: 233 RVSSEVIDVVLSVIRKSQNLKKLQLRSCSLPKDFITLLASAFHNNQNACLEYLDLSRNPI 292
Query: 240 XXXXXXXXXXX-LPRLKNLKSINFGDCLLKSRGARAL 275
LPRL LK +NF +C L + L
Sbjct: 293 DDKKGFTILSSVLPRLNQLKYVNFSECQLSDKSINLL 329
>AL110478-5|CAB76746.1| 388|Caenorhabditis elegans Hypothetical
protein Y26D4A.11 protein.
Length = 388
Score = 29.9 bits (64), Expect = 4.8
Identities = 10/43 (23%), Positives = 26/43 (60%)
Query: 370 DSGREDIQSDVERFLKDPSVKHLNSLGDRAAELIDAHLQMIRD 412
D+G+E SD+++ K ++ H ++ D+ A +I+ + +++
Sbjct: 161 DNGKEYYNSDMKKLFKSFNINHFSTYSDKKASIIERFNRTLKE 203
>AF063007-6|AAC16427.2| 523|Caenorhabditis elegans Taf
(tbp-associated transcriptionfactor) family protein 4
protein.
Length = 523
Score = 29.9 bits (64), Expect = 4.8
Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 11/126 (8%)
Query: 8 SLNTVLDEPAQPETGVDFSGKSLKL--DTAKDAQQIVDAINKCPNLQYLALTGNTLGVTA 65
+L VL AQP + F +L + ++ V+ +N P Y+ G T G
Sbjct: 152 NLQQVLKSQAQPHL-LPFLQNTLPALRNAVRNGTASVEGVNPPPG--YVFNNGRTPGPPQ 208
Query: 66 AHAISKALESHPELKIARFSDMFTGRMKTEIPPALSALGDGMIAAGARLAVLDLSDNAFG 125
+ + P L++ + + +IPP + G M++ GAR + +
Sbjct: 209 PPPPQQQSQQQPPLEMRQIPN------PNQIPPQMVQGGPHMVSVGARPMIRPMGPGGPS 262
Query: 126 PIGVEG 131
P+G++G
Sbjct: 263 PMGLQG 268
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.317 0.134 0.384
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,174,210
Number of Sequences: 27539
Number of extensions: 345921
Number of successful extensions: 941
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 918
Number of HSP's gapped (non-prelim): 21
length of query: 542
length of database: 12,573,161
effective HSP length: 85
effective length of query: 457
effective length of database: 10,232,346
effective search space: 4676182122
effective search space used: 4676182122
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 62 (29.1 bits)
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