GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001699-TA|BGIBMGA001699-PA|IPR003590|Leucine-rich
repeat, ribonuclease inhibitor subtype, IPR009109|Ran-GTPase
activating protein 1, C-terminal, IPR001611|Leucine-rich repeat
         (542 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    24   2.8  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    24   2.8  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   6.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   8.5  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 24.2 bits (50), Expect = 2.8
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 377 QSDVERFLKDPSVKHLNSLGDRAAELIDAHL-QMIRDPDAMTEAY 420
           +SD+  FL  PSV +L+ L  R+  L D  L    RD   M+E +
Sbjct: 305 ESDLVTFLCYPSVMNLDDLTRRSLYLSDIPLHDATRDLVLMSEQF 349


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 24.2 bits (50), Expect = 2.8
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 377 QSDVERFLKDPSVKHLNSLGDRAAELIDAHL-QMIRDPDAMTEAY 420
           +SD+  FL  PSV +L+ L  R+  L D  L    RD   M+E +
Sbjct: 305 ESDLVTFLCYPSVMNLDDLTRRSLYLSDIPLHDATRDLVLMSEQF 349


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.0 bits (47), Expect = 6.4
 Identities = 7/24 (29%), Positives = 16/24 (66%)

Query: 208 QNGIYHVGITALSEAFKHNPALNH 231
           +NGIY + ++ ++    ++P L+H
Sbjct: 253 KNGIYGIALSPVTNNLYYSPLLSH 276


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)

Query: 121 DNAFGPIGVEGLAKLLQSD 139
           DN  G +G E L KL Q D
Sbjct: 627 DNLLGELGGERLLKLAQGD 645


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.134    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,167
Number of Sequences: 429
Number of extensions: 3615
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 4
length of query: 542
length of database: 140,377
effective HSP length: 61
effective length of query: 481
effective length of database: 114,208
effective search space: 54934048
effective search space used: 54934048
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 46 (22.6 bits)