Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001699-TA|BGIBMGA001699-PA|IPR003590|Leucine-rich
repeat, ribonuclease inhibitor subtype, IPR009109|Ran-GTPase
activating protein 1, C-terminal, IPR001611|Leucine-rich repeat
(542 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g63130.1 68416.m07090 RAN GTPase activating protein 1 (RanGAP... 69 6e-12
At5g19320.1 68418.m02302 RAN GTPase activating protein 2 (RanGAP... 69 1e-11
At1g10510.1 68414.m01183 leucine-rich repeat family protein simi... 46 5e-05
At4g18760.1 68417.m02772 leucine-rich repeat family protein cont... 32 0.84
At2g20210.1 68415.m02363 leucine-rich repeat family protein cont... 32 0.84
At3g06000.1 68416.m00685 leucine-rich repeat family protein cont... 32 1.1
At1g10040.1 68414.m01132 expressed protein non-consensus GC dono... 31 2.6
At3g21150.1 68416.m02672 zinc finger (B-box type) family protein... 30 4.5
At1g09970.2 68414.m01124 leucine-rich repeat transmembrane prote... 30 4.5
At1g09970.1 68414.m01123 leucine-rich repeat transmembrane prote... 30 4.5
At5g40450.1 68418.m04905 expressed protein 29 7.8
At3g18730.1 68416.m02378 tetratricopeptide repeat (TPR)-containi... 29 7.8
>At3g63130.1 68416.m07090 RAN GTPase activating protein 1 (RanGAP1)
contains Pfam PF00560: Leucine Rich Repeat domains;
identical to RAN GTPase activating protein 1
(GI:6708466)[Arabidopsis thaliana]
Length = 535
Score = 69.3 bits (162), Expect = 6e-12
Identities = 70/280 (25%), Positives = 107/280 (38%), Gaps = 9/280 (3%)
Query: 24 DFSGKSLKLDTAKDAQQIVDAINKCPNLQY--LALTGNTLGVTAAHAISKALES-HPELK 80
D SG S ++A+ ++ + P Y + + + G AA + L S +L
Sbjct: 121 DISGGSRAFIEEEEARDLLRPLAD-PRNSYTKIRFSNRSFGSEAAKFAASVLSSIKDQLT 179
Query: 81 IARFSDMFTGRMKTEIPPALSALGDGMIAAGARLAVLDLSDNAFGPIGVEGLAKLLQSDV 140
SD GR + E ++ + G++L L+LSDNA G G+ A L+ S
Sbjct: 180 EVDLSDFVAGRPEAEALEVMNMFSSAL--EGSKLRYLNLSDNALGEKGIRAFASLINSQH 237
Query: 141 CSDXXXXXXXXXXXXITGGXXXXXXXXXXXXXXXVFIAGRNRLENDGATALAKVFQEMGS 200
+ V N ++GATA+A++ +E S
Sbjct: 238 DLEELYLMNDGISED---AARAVRELLPSTDKIRVLQFHNNMTGDEGATAIAEIVRECPS 294
Query: 201 LEEIAMPQNGIYHVGITALSEAFKHNPALNHLNLNDNTXXXXXXXXXXXXLPRLKNLKSI 260
LE+ I G AL+EA +H L L+L DN L L +L I
Sbjct: 295 LEDFRCSSTRIGSEGGVALAEALEHCSHLKKLDLRDNMFGVEGGIALAKTLSVLTHLTEI 354
Query: 261 NFGDCLLKSRGARALAKAFKGNSLLLEVRNSLGNAANKKS 300
L+ G AL++A ++ LEV GN KS
Sbjct: 355 YMSYLNLEDEGTEALSEALLKSAPSLEVLELAGNDITVKS 394
Score = 38.3 bits (85), Expect = 0.013
Identities = 45/202 (22%), Positives = 74/202 (36%), Gaps = 13/202 (6%)
Query: 38 AQQIVDAINKCPNLQYLALTGNTLGVTAAHAISKALESHPELKIARFSD-MFTGRMKTEI 96
A I + + +CP+L+ + +G A+++ALE LK D MF +
Sbjct: 282 ATAIAEIVRECPSLEDFRCSSTRIGSEGGVALAEALEHCSHLKKLDLRDNMFGVEGGIAL 341
Query: 97 PPALSALGDGMIAAGARLAVLDLSDNAFGPIGVEGLAK-LLQSDVCSDXXXXXXXXXXXX 155
LS L ++ L+L D G E L++ LL+S +
Sbjct: 342 AKTLSVLTH---LTEIYMSYLNLEDE-----GTEALSEALLKSAPSLEVLELAGNDITVK 393
Query: 156 ITGGXXXXXXXXXXXXXXXVFIAGRNRLENDGATALAKVFQEMGSLEEIAMPQNGIYHVG 215
TG + N L+++G +AK + L E+ + N I G
Sbjct: 394 STGNLAACIASKQSLAKLNL---SENELKDEGTILIAKAVEGHDQLVEVDLSTNMIRRAG 450
Query: 216 ITALSEAFKHNPALNHLNLNDN 237
AL++ LN+N N
Sbjct: 451 ARALAQTVVKKNTFKLLNINGN 472
>At5g19320.1 68418.m02302 RAN GTPase activating protein 2 (RanGAP2)
identical to RAN GTPase activating protein 2 GI:6708468
from [Arabidopsis thaliana]
Length = 545
Score = 68.5 bits (160), Expect = 1e-11
Identities = 67/283 (23%), Positives = 107/283 (37%), Gaps = 7/283 (2%)
Query: 14 DEPAQPETGVDFSGKSLKLDTAKDAQQIVDAINKCPNLQY-LALTGNTLGVTAAHAISKA 72
D + ET D S A++A++++ + + N + + + G+ AA
Sbjct: 116 DSVSPRETFFDISKGKRAFIEAEEAEELLKPLKEPGNAYTKICFSNRSFGLGAARVAEPI 175
Query: 73 LES-HPELKIARFSDMFTGRMKTEIPPALSALGDGMIAAGARLAVLDLSDNAFGPIGVEG 131
L S +LK SD GR + E ++ D + G+ L+ L+LSDNA G GV
Sbjct: 176 LASLKDQLKEVDLSDFVAGRPELEALEVMNIFSDAL--QGSILSSLNLSDNALGEKGVRA 233
Query: 132 LAKLLQSDVCSDXXXXXXXXXXXXITGGXXXXXXXXXXXXXXXVFIAGRNRLENDGATAL 191
LL+S + V N ++GA A+
Sbjct: 234 FGALLKSLSSLEELYLMNDGISKE---AAQAVSELIPSTENLRVLHFHNNMTGDEGALAI 290
Query: 192 AKVFQEMGSLEEIAMPQNGIYHVGITALSEAFKHNPALNHLNLNDNTXXXXXXXXXXXXL 251
A+V + LE + G ALSEA +H + L+L DN L
Sbjct: 291 AEVVKRSPLLENFRCSSTRVGSKGGIALSEALEHCTHMEKLDLRDNMFGTEAGVSLSKTL 350
Query: 252 PRLKNLKSINFGDCLLKSRGARALAKAFKGNSLLLEVRNSLGN 294
K++ + L+ GA A+ A K ++ +EV GN
Sbjct: 351 SSFKHMTELYLSYLNLEDEGAIAIVNALKESASPIEVLEMAGN 393
Score = 35.5 bits (78), Expect = 0.090
Identities = 50/250 (20%), Positives = 88/250 (35%), Gaps = 10/250 (4%)
Query: 38 AQQIVDAINKCPNLQYLALTGNTLGVTAAHAISKALESHPELKIARFSDMFTGRMKTEIP 97
AQ + + I NL+ L N G A AI++ ++ P L+ R S G K I
Sbjct: 259 AQAVSELIPSTENLRVLHFHNNMTGDEGALAIAEVVKRSPLLENFRCSSTRVGS-KGGI- 316
Query: 98 PALSALGDGMIAAGARLAVLDLSDNAFGPIGVEGLAKLLQSDVCSDXXXXXXXXXXXXIT 157
AL + + + LDL DN FG L+K L S
Sbjct: 317 ----ALSEALEHC-THMEKLDLRDNMFGTEAGVSLSKTLSS--FKHMTELYLSYLNLEDE 369
Query: 158 GGXXXXXXXXXXXXXXXVFIAGRNRLENDGATALAKVFQEMGSLEEIAMPQNGIYHVGIT 217
G V N + + A+A+A L ++ + +N + G
Sbjct: 370 GAIAIVNALKESASPIEVLEMAGNDITVEAASAIAACVAAKQDLNKLNLSENELKDEGCV 429
Query: 218 ALSEAFKH-NPALNHLNLNDNTXXXXXXXXXXXXLPRLKNLKSINFGDCLLKSRGARALA 276
++ + + L +++++ N + + + K +N ++ G L
Sbjct: 430 QIANCIEEGHSKLQYIDMSTNYIRRAGARALAHVVVKKEAFKLLNIDGNIISEEGIEELK 489
Query: 277 KAFKGNSLLL 286
+ FK + LL
Sbjct: 490 EIFKKSPELL 499
Score = 35.1 bits (77), Expect = 0.12
Identities = 28/135 (20%), Positives = 57/135 (42%), Gaps = 2/135 (1%)
Query: 181 NRLENDGATALAKVFQEMGSLEEIAMPQNGIYHVGITALSEAFKHNPALNHLNLNDNTXX 240
N L G A + + + SLEE+ + +GI A+SE L L+ ++N
Sbjct: 224 NALGEKGVRAFGALLKSLSSLEELYLMNDGISKEAAQAVSELIPSTENLRVLHFHNNMTG 283
Query: 241 XXXXXXXXXXLPRLKNLKSINFGDCLLKSRGARALAKAFKGNSLL--LEVRNSLGNAANK 298
+ R L++ + S+G AL++A + + + L++R+++
Sbjct: 284 DEGALAIAEVVKRSPLLENFRCSSTRVGSKGGIALSEALEHCTHMEKLDLRDNMFGTEAG 343
Query: 299 KSLKDKLGASAELSD 313
SL L + +++
Sbjct: 344 VSLSKTLSSFKHMTE 358
>At1g10510.1 68414.m01183 leucine-rich repeat family protein similar
to ribonuclease inhibitor (GI:164639) [Sus scrofa
(pig)]; contains Pfam PF00560: Leucine Rich Repeat
domains
Length = 605
Score = 46.4 bits (105), Expect = 5e-05
Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 3/121 (2%)
Query: 181 NRLENDGATALAKVFQEMGSLEEIAMPQNGIYHVGITALSEAFKHNPALNHLNLNDNTXX 240
N + ++GA L E S+E + + I G ++E K N L + LN+N
Sbjct: 236 NPIGDEGAKTLCATLMENSSIEILQLNSTDIGDEGAKEIAELLKRNSTLRIIELNNNMID 295
Query: 241 XXXXXXXXXXLPRLKNLKSINFGDCLLKSRGARALAKAFKGNSLLLEVR---NSLGNAAN 297
L +++++ + GA ALAK +GN L E+ NS+G+
Sbjct: 296 YSGFTSLAGALLENNTIRNLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGT 355
Query: 298 K 298
+
Sbjct: 356 R 356
Score = 41.5 bits (93), Expect = 0.001
Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 3/110 (2%)
Query: 185 NDGATALAKVFQEMGSLEEIAMPQNGIYHVGITALSEAFKHNPALNHLNLNDNTXXXXXX 244
++GA +A++ + +L I + N I + G T+L+ A N + +L+LN N
Sbjct: 268 DEGAKEIAELLKRNSTLRIIELNNNMIDYSGFTSLAGALLENNTIRNLHLNGNYGGALGA 327
Query: 245 XXXXXXLPRLKNLKSINFGDCLLKSRGARAL---AKAFKGNSLLLEVRNS 291
L K+L+ ++ + G RAL + KG LL++ N+
Sbjct: 328 NALAKGLEGNKSLRELHLHGNSIGDEGTRALMAGLSSHKGKVALLDLGNN 377
Score = 39.5 bits (88), Expect = 0.006
Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 2/123 (1%)
Query: 185 NDGATALAKVFQEMGSLEEIAMPQNGIYHVGITALSEAFKHNPALNHLNLNDNTXXXXXX 244
++G LA+ ++EE++ NGI G+ A + N L LNL+ N
Sbjct: 184 DEGLFFLAESLGYNQTVEEVSFSANGITAAGVKAFDGVLQSNIMLKILNLSGNPIGDEGA 243
Query: 245 XXXXXXLPRLKNLKSINFGDCLLKSRGARALAKAFKGNSLL--LEVRNSLGNAANKKSLK 302
L +++ + + GA+ +A+ K NS L +E+ N++ + + SL
Sbjct: 244 KTLCATLMENSSIEILQLNSTDIGDEGAKEIAELLKRNSTLRIIELNNNMIDYSGFTSLA 303
Query: 303 DKL 305
L
Sbjct: 304 GAL 306
Score = 38.7 bits (86), Expect = 0.010
Identities = 55/261 (21%), Positives = 94/261 (36%), Gaps = 10/261 (3%)
Query: 35 AKDAQQIVDAINKCPNLQYLALTGNTLGVTAAHAISKALESHPELKIARFSDMFTGRMKT 94
A A + + +L+ L L GN++G A+ L SH K+A G
Sbjct: 324 ALGANALAKGLEGNKSLRELHLHGNSIGDEGTRALMAGLSSHKG-KVALLD---LGNNSI 379
Query: 95 EIPPALSALGDGMIAAGARLAVLDLSDNAFGPIGVEGLAKLLQSDVCSDXXXXXXXXXXX 154
A I L L+L N G G E +A L+ +
Sbjct: 380 SAKGAFYVAE--YIKRSKSLVWLNLYMNDIGDEGAEKIADSLKQN---RSIATIDLGGNN 434
Query: 155 XITGGXXXXXXXXXXXXXXXVFIAGRNRLENDGATALAKVFQEMGSLEEIAMPQNGIYHV 214
G G N + DGA AL+++ + G+++ + + I
Sbjct: 435 IHAEGVNAIAQALKDNAIITTLEVGYNPIGPDGAKALSEILKFHGNVKTLKLGWCQIAAK 494
Query: 215 GITALSEAFKHNPALNHLNLNDNTXXXXXXXXXXXXLPRLKN-LKSINFGDCLLKSRGAR 273
G +++ ++N ++ L+L N L + L S++ G ++ GA
Sbjct: 495 GAEHVADMLRYNNTISVLDLRANGLRDEGASCLARSLKVVNEALTSVDLGFNEIRDDGAF 554
Query: 274 ALAKAFKGNSLLLEVRNSLGN 294
A+A+A K N + +LGN
Sbjct: 555 AIAQALKANEDVTVTSINLGN 575
>At4g18760.1 68417.m02772 leucine-rich repeat family protein
contains leucine rich-repeat domains Pfam:PF00560,
INTERPRO:IPR001611
Length = 431
Score = 32.3 bits (70), Expect = 0.84
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 28 KSLKLDTAKDAQQIVDAINKCPNLQYLALTGNTLGVTAAHAISK 71
K+L L + K + I D+I+ P L +L L+GN L T ISK
Sbjct: 263 KNLSLSSNKLSGPIPDSISSIPELTHLDLSGNQLNGTIPRFISK 306
>At2g20210.1 68415.m02363 leucine-rich repeat family protein
contains leucine rich repeat (LRR) domains, Pfam:PF00560
Length = 604
Score = 32.3 bits (70), Expect = 0.84
Identities = 34/116 (29%), Positives = 47/116 (40%), Gaps = 6/116 (5%)
Query: 181 NRLENDGATALAKVFQEMGSLEEIAMPQNGIYHVGITALSEAFKHNP--ALNHLNLNDNT 238
N L+ A LA M LE + + N I GI +L F NP L LNL +
Sbjct: 365 NELDRYDAENLAHALLHMPGLESLDLSGNPIEDSGIRSLISYFTKNPDSRLADLNLENCE 424
Query: 239 XXXXXXXXXXXXLPRL-KNLKSINFGDCLLKSRGARALAKAFKGNSLLLEVRNSLG 293
L L K LK ++ D L S A A+ +F ++ +E N +G
Sbjct: 425 LSCCGVIEFLDTLSMLEKPLKFLSVADNALGSEVAEAVVNSF---TISIESLNIMG 477
>At3g06000.1 68416.m00685 leucine-rich repeat family protein
contains Pfam doamin PF00560: Leucine Rich Repeat;
contains similarity to RAN GTPase activating protein 2
[Arabidopsis thaliana] gi|6708468|gb|AAF25948
Length = 211
Score = 31.9 bits (69), Expect = 1.1
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 183 LENDGATALAKVFQEMG-SLEEIAMPQNGIYHVGITALSEAFKHNPALNHLNLNDN 237
LEN GA AL + SL+ I M N I + TA++ L LNL++N
Sbjct: 49 LENGGAIALVNALKNSAPSLQVIEMAGNNITYEAATAIAVCLAAKRHLKKLNLSEN 104
Score = 29.1 bits (62), Expect = 7.8
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 41 IVDAI-NKCPNLQYLALTGNTLGVTAAHAISKALESHPELKIARFSD 86
+V+A+ N P+LQ + + GN + AA AI+ L + LK S+
Sbjct: 57 LVNALKNSAPSLQVIEMAGNNITYEAATAIAVCLAAKRHLKKLNLSE 103
>At1g10040.1 68414.m01132 expressed protein non-consensus GC donor
splice site at exon boundary 21576
Length = 412
Score = 30.7 bits (66), Expect = 2.6
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 22 GVDFSGKSLKLDTAKDAQQIVDAINKCPNLQYLALTGNTL-GVTAAHAISKALESHPELK 80
GVD G+ L A+++ I + P+LQ ++ G++L G+ A +AI + E +
Sbjct: 127 GVDVMGERL-------AEEVRSVIKRHPSLQKISFVGHSLGGLIARYAIGRLYEQESREE 179
Query: 81 IARFSDMFTGRMKTEIPPA 99
+ SD + E P A
Sbjct: 180 LPHNSDDIGDKCSIEEPKA 198
>At3g21150.1 68416.m02672 zinc finger (B-box type) family protein
contains Pfam profile:PF01760 CONSTANS family zinc
finger
Length = 225
Score = 29.9 bits (64), Expect = 4.5
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 483 PGCYSILANVLDEAYFPAGLRDTLRYQTTALCCCSEYDCIET 524
P C S+ N + P R T ++++ CCS DC+ +
Sbjct: 48 PNCKSLTQNFVSGPLLPWPPRTTCCSESSSSSCCSSLDCVSS 89
>At1g09970.2 68414.m01124 leucine-rich repeat transmembrane protein
kinase, putative Similar to A. thaliana receptor-like
protein kinase (gb|RLK5_ARATH). ESTs
gb|ATTS0475,gb|ATTS4362 come from this gene isoform
contains a TG acceptor site at intron.
Length = 977
Score = 29.9 bits (64), Expect = 4.5
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 16/94 (17%)
Query: 29 SLKLDTAKDAQQIVDAINKCPNLQYLALTGNTLGVTAAHAISKALESHPELKIARFSDMF 88
SLK+ + + +I D+I C L + + N++ H L S P L SD
Sbjct: 486 SLKMQSNGFSGEIPDSIGSCSMLSDVNMAQNSISGEIPH----TLGSLPTLNALNLSD-- 539
Query: 89 TGRMKTEIPPALSALGDGMIAAGARLAVLDLSDN 122
++ IP +LS+L RL++LDLS+N
Sbjct: 540 -NKLSGRIPESLSSL---------RLSLLDLSNN 563
>At1g09970.1 68414.m01123 leucine-rich repeat transmembrane protein
kinase, putative Similar to A. thaliana receptor-like
protein kinase (gb|RLK5_ARATH). ESTs
gb|ATTS0475,gb|ATTS4362 come from this gene isoform
contains a TG acceptor site at intron.
Length = 976
Score = 29.9 bits (64), Expect = 4.5
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 16/94 (17%)
Query: 29 SLKLDTAKDAQQIVDAINKCPNLQYLALTGNTLGVTAAHAISKALESHPELKIARFSDMF 88
SLK+ + + +I D+I C L + + N++ H L S P L SD
Sbjct: 486 SLKMQSNGFSGEIPDSIGSCSMLSDVNMAQNSISGEIPH----TLGSLPTLNALNLSD-- 539
Query: 89 TGRMKTEIPPALSALGDGMIAAGARLAVLDLSDN 122
++ IP +LS+L RL++LDLS+N
Sbjct: 540 -NKLSGRIPESLSSL---------RLSLLDLSNN 563
>At5g40450.1 68418.m04905 expressed protein
Length = 2910
Score = 29.1 bits (62), Expect = 7.8
Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 354 IRDIDTVIDVKEISLDDSGREDIQSDVERFLKDPSVKHL-NSLGDRAAELIDAHLQMIRD 412
+++ D ++D+K+ DD +E + S+V++ KD + N R E + + +
Sbjct: 2391 VKEEDQIVDIKDKKKDDEEQEIVSSEVKKDNKDARELEVGNDFVSRDGEKEEVPHNALEN 2450
Query: 413 PDAMTEAYA 421
+ M E A
Sbjct: 2451 EEEMNEVVA 2459
>At3g18730.1 68416.m02378 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515: TPR Domain
Length = 1311
Score = 29.1 bits (62), Expect = 7.8
Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 176 FIAGRNRLENDGATALAKVFQE-MGSLEEIAMPQNGIYHVGITALSEAFKHNPALNHLNL 234
F G N + +G +AL ++ + +++ + + + + G+ + +A N L LNL
Sbjct: 1098 FNVGGNPITEEGISALGELLRNPCSNIKVLILSKCHLKLAGLLCIIQALSDNKNLEELNL 1157
Query: 235 NDN 237
+DN
Sbjct: 1158 SDN 1160
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.134 0.384
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,997,852
Number of Sequences: 28952
Number of extensions: 343920
Number of successful extensions: 1077
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1049
Number of HSP's gapped (non-prelim): 29
length of query: 542
length of database: 12,070,560
effective HSP length: 85
effective length of query: 457
effective length of database: 9,609,640
effective search space: 4391605480
effective search space used: 4391605480
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 62 (29.1 bits)
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