Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001698-TA|BGIBMGA001698-PA|IPR001424|Superoxide
dismutase, copper/zinc binding
(224 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0863 + 28847761-28848009,28848108-28848131,28849388-288494... 80 1e-15
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261... 75 5e-14
03_02_1006 + 13150394-13150450,13150787-13150899,13152538-131527... 75 5e-14
07_03_1599 - 28022196-28022218,28022355-28022408,28022545-280226... 73 1e-13
03_02_0185 - 6239421-6239480,6239971-6240024,6240523-6240578,624... 52 5e-07
03_06_0167 - 32115770-32115886,32116388-32117102,32117178-321173... 30 1.3
08_02_0830 - 21617485-21618198 29 4.0
08_02_0829 - 21604845-21605588 28 7.1
>04_04_0863 +
28847761-28848009,28848108-28848131,28849388-28849460,
28849550-28849684,28850191-28850411,28851747-28851983
Length = 312
Score = 80.2 bits (189), Expect = 1e-15
Identities = 52/156 (33%), Positives = 72/156 (46%), Gaps = 21/156 (13%)
Query: 11 ILGVVRLQQTAEGPLVADGSIDGLSPGRHGLHVYESGDLSQGCNSIXXXXXXXXXXXXXX 70
I GVVRL Q + + + GLSPG+HG + E GDL++G S
Sbjct: 176 IFGVVRLAQVNMELAIVEATFSGLSPGKHGWSINEFGDLTRGAES--------TGKVYNP 227
Query: 71 XXXXXXXXXXXLGNITADANGRAAFRIVDDVLKVWDVIGRSMGVTERGDDCGRGDGTSRV 130
LG + A G A F + LKV D+IGRS+ + D
Sbjct: 228 SDYRSNKPLGDLGTLEAGEKGEAQFSASKEKLKVVDLIGRSIALYATED----------- 276
Query: 131 DGNSGPILACGIIARSAGIFQNPKRICACDGVVVWD 166
S P +A +IARSAG+ +N K++C CDGV +W+
Sbjct: 277 --RSDPGIAAAVIARSAGVGENYKKLCTCDGVTIWE 310
>08_02_1596 +
28125331-28125556,28125986-28126047,28126160-28126199,
28126934-28127029,28127138-28127169,28127274-28127349,
28127430-28127483,28127916-28127941
Length = 203
Score = 74.9 bits (176), Expect = 5e-14
Identities = 48/139 (34%), Positives = 67/139 (48%), Gaps = 6/139 (4%)
Query: 9 NKILGVVRLQQTAEGPLVADGSIDGLSPGRHGLHVYESGDLSQGCNSIXXXXXXXXXXXX 68
+++ GVV L Q +GP + + GL+PG HG H++E GD + GC I
Sbjct: 62 SQVEGVVTLTQDDQGPTTVNVRVTGLTPGLHGFHLHEFGDTTNGC--ISTGPHFNPNNLT 119
Query: 69 XXXXXXXXXXXXXLGNITADANGRAAFRIVDDVLKVW---DVIGRSMGVTERGDDCGR-G 124
LGNI A+A G A IVD + + V+GR+ V E DD G+ G
Sbjct: 120 HGAPEDEVRHAGDLGNIVANAEGVAEATIVDKQIPLSGPNSVVGRAFVVHELEDDLGKGG 179
Query: 125 DGTSRVDGNSGPILACGII 143
S GN+G LACG++
Sbjct: 180 HELSLSTGNAGGRLACGVV 198
>03_02_1006 +
13150394-13150450,13150787-13150899,13152538-13152709,
13153791-13153878,13153971-13154072,13154197-13154292,
13154547-13154578,13154727-13154802,13155264-13155317,
13155431-13155453
Length = 270
Score = 74.9 bits (176), Expect = 5e-14
Identities = 44/137 (32%), Positives = 63/137 (45%), Gaps = 6/137 (4%)
Query: 11 ILGVVRLQQTAEGPLVADGSIDGLSPGRHGLHVYESGDLSQGCNSIXXXXXXXXXXXXXX 70
+ G + Q +GP GS+ GL PG HG H++ GD + GC S
Sbjct: 132 VKGTIHFVQEGDGPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMS--TGPHYNPAGKEHG 189
Query: 71 XXXXXXXXXXXLGNITADANGRAAFRIVDDVLKVW---DVIGRSMGVTERGDDCGR-GDG 126
LGN+TA +G A +VD + + +IGR++ V DD G+ G
Sbjct: 190 APEDETRHAGDLGNVTAGEDGVANIHVVDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHE 249
Query: 127 TSRVDGNSGPILACGII 143
S+ GN+G +ACGII
Sbjct: 250 LSKTTGNAGGRVACGII 266
>07_03_1599 -
28022196-28022218,28022355-28022408,28022545-28022620,
28022727-28022758,28022921-28023016,28023105-28023206,
28023291-28023366
Length = 152
Score = 73.3 bits (172), Expect = 1e-13
Identities = 46/137 (33%), Positives = 63/137 (45%), Gaps = 6/137 (4%)
Query: 11 ILGVVRLQQTAEGPLVADGSIDGLSPGRHGLHVYESGDLSQGCNSIXXXXXXXXXXXXXX 70
+ G + Q +GP GS+ GL PG HG HV+ GD + GC S
Sbjct: 14 VKGTIFFSQEGDGPTSVTGSVSGLKPGLHGFHVHALGDTTNGCMS--TGPHFNPTGKEHG 71
Query: 71 XXXXXXXXXXXLGNITADANGRAAFRIVDDVLKV---WDVIGRSMGVTERGDDCGR-GDG 126
LGNITA A+G A + D + + +IGR++ V DD G+ G
Sbjct: 72 APQDENRHAGDLGNITAGADGVANVNVSDSQIPLTGAHSIIGRAVVVHADPDDLGKGGHE 131
Query: 127 TSRVDGNSGPILACGII 143
S+ GN+G +ACGII
Sbjct: 132 LSKTTGNAGGRVACGII 148
>03_02_0185 -
6239421-6239480,6239971-6240024,6240523-6240578,
6241108-6241183,6241276-6241307,6241421-6241516,
6242498-6242599,6242728-6242833
Length = 193
Score = 51.6 bits (118), Expect = 5e-07
Identities = 39/141 (27%), Positives = 57/141 (40%), Gaps = 10/141 (7%)
Query: 18 QQTAEGPLVADGSIDGLSPGRHGLHVYESGDLSQGCNSIXXXXXXXXXXXXXXXXXXXXX 77
Q + G G + GL+PG HG H++ GD + GCNS
Sbjct: 31 QDPSTGYTEVRGRVTGLAPGLHGFHIHSFGDTTNGCNS--TGPHFNPHNKSHGAPSDDER 88
Query: 78 XXXXLGNITADANGRAAFRIVDDVLKV---WDVIGRSMGVTERGDDCGRGDGTSRVDGNS 134
LGNI A+ +G A I D + + ++GR++ V DD GRG N
Sbjct: 89 HVGDLGNIVANKDGVADIFIKDLQISLSGPHSILGRAVVVHADSDDLGRGQ-----KSNC 143
Query: 135 GPILACGIIARSAGIFQNPKR 155
+ C I AR + + K+
Sbjct: 144 QSLFLCCIYARFVVVMNSVKQ 164
>03_06_0167 -
32115770-32115886,32116388-32117102,32117178-32117383,
32118094-32118138,32119047-32119109,32119726-32119749,
32120673-32120772,32120814-32120907,32121036-32121074,
32121605-32121668
Length = 488
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 2 VSDQSCCNKILGVVRLQQTAEGPLVADGSIDGLSPGRHGLHVYESGDLSQGC 53
+ DQ K++ + + A + ++ GL P HG HV+ G + GC
Sbjct: 15 LQDQERAEKVM-LKAVDVLASSLITVKENVSGLKPVLHGFHVHALGGTTNGC 65
>08_02_0830 - 21617485-21618198
Length = 237
Score = 28.7 bits (61), Expect = 4.0
Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 9/66 (13%)
Query: 122 GRGDGTSRVDGNSGPILACGIIARSAGIFQNPKRICACDGVVVWDERDKPL--AGSGRRG 179
GR D R D + P G A S G ++P C D V WD +PL A S R
Sbjct: 123 GRADSYERWDAHKTP----GSPASSTGSSRSP---CRADSVERWDSNKRPLSRASSAERW 175
Query: 180 QGDRAP 185
++ P
Sbjct: 176 DINKKP 181
>08_02_0829 - 21604845-21605588
Length = 247
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 7/56 (12%)
Query: 118 GDDCGRGDGTSRVDGNSGPILACGIIARSAGIFQNPKRICACDGVVVWDERDKPLA 173
G + GR D R D + P G A S G +P C D V WD +PL+
Sbjct: 117 GGNPGRADSCERWDAHKTP----GSPASSTGSTGSP---CRADSVERWDSSKRPLS 165
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.138 0.430
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,876,138
Number of Sequences: 37544
Number of extensions: 237602
Number of successful extensions: 514
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 498
Number of HSP's gapped (non-prelim): 9
length of query: 224
length of database: 14,793,348
effective HSP length: 79
effective length of query: 145
effective length of database: 11,827,372
effective search space: 1714968940
effective search space used: 1714968940
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)
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