GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001698-TA|BGIBMGA001698-PA|IPR001424|Superoxide
dismutase, copper/zinc binding
         (224 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    22   3.4  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   3.4  

>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 6/20 (30%), Positives = 15/20 (75%)

Query: 1   MVSDQSCCNKILGVVRLQQT 20
           ++S+  C N+++G+ +L Q+
Sbjct: 386 IISNLDCVNEVIGIQQLSQS 405


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/35 (25%), Positives = 15/35 (42%)

Query: 151 QNPKRICACDGVVVWDERDKPLAGSGRRGQGDRAP 185
           Q+   I + + ++ W   D    G G  G G+  P
Sbjct: 502 QHYTNIISQEQIISWRSSDDAKGGGGGSGSGNNQP 536


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.138    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,010
Number of Sequences: 317
Number of extensions: 1300
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 2
length of query: 224
length of database: 114,650
effective HSP length: 55
effective length of query: 169
effective length of database: 97,215
effective search space: 16429335
effective search space used: 16429335
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)