GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001698-TA|BGIBMGA001698-PA|IPR001424|Superoxide
dismutase, copper/zinc binding
         (224 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces...    49   6e-07
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    43   3e-05
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    27   2.2  
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    27   2.9  
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon...    25   6.8  

>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 48.8 bits (111), Expect = 6e-07
 Identities = 36/141 (25%), Positives = 60/141 (42%), Gaps = 8/141 (5%)

Query: 9   NKILGVVRLQQTAEGPLVAD--GSIDGLSPGRHGLHVYESGDLSQGCNSIXXXXXXXXXX 66
           +K+ GVV  +Q  +   V+     +   +  + G H+++ GD + GC S           
Sbjct: 12  SKVSGVVTFEQVDQNSQVSVIVDLVGNDANAKRGFHIHQFGDNTNGCTS--AGPHFNPEG 69

Query: 67  XXXXXXXXXXXXXXXLGNITADANGRAAFRIVDDVLKVW---DVIGRSMGVTERGDDCGR 123
                          LGN+ +DA G       D V+ ++    +IGR++ +    DD G+
Sbjct: 70  KTHGDRTAAVRHVGDLGNLESDAQGNIKTTFSDSVISLFGANSIIGRTIVIHAGEDDLGK 129

Query: 124 GDG-TSRVDGNSGPILACGII 143
           G    S   GN+G   ACG+I
Sbjct: 130 GTSEESLKTGNAGARNACGVI 150


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 43.2 bits (97), Expect = 3e-05
 Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 3/50 (6%)

Query: 141 GIIARSAGIFQNPKRICACDGVVVWDERDKPLA---GSGRRGQGDRAPSE 187
           GII+RSAG+ QN K+ICAC G  +W E  +  +   GS    + D +PSE
Sbjct: 186 GIISRSAGLGQNTKQICACTGKSLWTEHAELKSVNEGSSCCSKKDSSPSE 235


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 6   SCCNKILGVVRLQQTAEGPLVADG 29
           +CC  ++G + L     GPL+ DG
Sbjct: 678 ACCENVIGYMPLPLGVAGPLIIDG 701


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
           Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/23 (52%), Positives = 14/23 (60%)

Query: 123 RGDGTSRVDGNSGPILACGIIAR 145
           RGDGT  + G   PI+A G I R
Sbjct: 403 RGDGTLEIRGYHKPIMAAGGIGR 425


>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 14/46 (30%), Positives = 20/46 (43%)

Query: 135 GPILACGIIARSAGIFQNPKRICACDGVVVWDERDKPLAGSGRRGQ 180
           G I+A G++     I +  KR+   +        D  L G G RGQ
Sbjct: 399 GAIVAAGVVIGDNTIIEKNKRLTTFESHSQGTLNDPSLVGIGGRGQ 444


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.138    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 750,354
Number of Sequences: 5004
Number of extensions: 24434
Number of successful extensions: 36
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 31
Number of HSP's gapped (non-prelim): 5
length of query: 224
length of database: 2,362,478
effective HSP length: 70
effective length of query: 154
effective length of database: 2,012,198
effective search space: 309878492
effective search space used: 309878492
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)