GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001698-TA|BGIBMGA001698-PA|IPR001424|Superoxide
dismutase, copper/zinc binding
         (224 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55396| Best HMM Match : Sod_Cu (HMM E-Value=1.5e-07)               109   2e-24
SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)                61   6e-10
SB_51847| Best HMM Match : Peptidase_S28 (HMM E-Value=2.7e-33)         32   0.33 
SB_53638| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_580| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   7.1  

>SB_55396| Best HMM Match : Sod_Cu (HMM E-Value=1.5e-07)
          Length = 100

 Score =  109 bits (262), Expect = 2e-24
 Identities = 54/97 (55%), Positives = 66/97 (68%), Gaps = 3/97 (3%)

Query: 82  LGNITADANGRAAFRIVDDVLKVWDVIGRSMGVTERGDDCGRGDGT-SRVDGNSGPILAC 140
           LGNI A+ NGRA FR  D  +KVWD+IGR++ V    DD GRG    S+  GNSG  + C
Sbjct: 5   LGNIIANQNGRATFRFEDKTVKVWDIIGRAIVVHADEDDLGRGGHELSKSTGNSGARVGC 64

Query: 141 GIIARSAGIFQNPKRICACDGVVVWDERDKPLAGSGR 177
           GIIARSAG+FQN K+ CACDG  +W+  DKPL  S +
Sbjct: 65  GIIARSAGLFQNTKKYCACDGRTLWE--DKPLKASSQ 99


>SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 61.3 bits (142), Expect = 6e-10
 Identities = 41/128 (32%), Positives = 60/128 (46%), Gaps = 7/128 (5%)

Query: 21  AEG-PLVADGSIDGLSPGRHGLHVYESGDLSQGCNSIXXXXXXXXXXXXXXXXXXXXXXX 79
           AEG P    G+I+GL  G HG H++  GD + GC  +                       
Sbjct: 23  AEGKPCKITGTIEGLKAGNHGFHIHVYGDNTNGC--VSAGPHFNPFKKEHGGPSDENRHV 80

Query: 80  XXLGNITADANGRAAFRIVDDVLKV---WDVIGRSMGVTERGDDCGR-GDGTSRVDGNSG 135
             LGN+ A  +G+A   + D ++ +     V+GRS+ V    DD GR G   S+  G++G
Sbjct: 81  GDLGNVVAGDDGKACIDMTDALVTLVGEHSVVGRSVVVHADEDDLGRGGHEDSKTTGHAG 140

Query: 136 PILACGII 143
             LACG+I
Sbjct: 141 GRLACGVI 148


>SB_51847| Best HMM Match : Peptidase_S28 (HMM E-Value=2.7e-33)
          Length = 1224

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 86  TADANGRAAFRIVDDVLKVWDVIGRSMGVTERGDD 120
           T + +G    R+  DV+K+W  +GR++G+ E   D
Sbjct: 374 TGNISGSELIRLARDVMKIWKRLGRALGLNENDLD 408


>SB_53638| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/45 (40%), Positives = 21/45 (46%)

Query: 97  IVDDVLKVWDVIGRSMGVTERGDDCGRGDGTSRVDGNSGPILACG 141
           +V  VL V  V G   G  + GDD G G G    D + G I  CG
Sbjct: 39  VVMVVLVVVVVSGCGDGGDDCGDDGGAGGGAGGDDDDGGGISGCG 83


>SB_580| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 3/34 (8%)

Query: 82  LGNITADANGRAAFRIVDDVLKV---WDVIGRSM 112
           LGNI ADANG A   I D ++ +     +IGRS+
Sbjct: 15  LGNIEADANGIADVSITDCLVSLTGQCSIIGRSL 48


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.138    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,247,847
Number of Sequences: 59808
Number of extensions: 227340
Number of successful extensions: 442
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 435
Number of HSP's gapped (non-prelim): 5
length of query: 224
length of database: 16,821,457
effective HSP length: 80
effective length of query: 144
effective length of database: 12,036,817
effective search space: 1733301648
effective search space used: 1733301648
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)