GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001698-TA|BGIBMGA001698-PA|IPR001424|Superoxide
dismutase, copper/zinc binding
         (224 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY524130-1|AAS17758.1|  211|Anopheles gambiae superoxide dismuta...    68   2e-13
AY745233-1|AAU93512.1|  100|Anopheles gambiae SOD3B protein.           46   7e-07
AY745232-1|AAU93511.1|   75|Anopheles gambiae SOD3A protein.           41   3e-05
AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic acetylch...    24   3.2  
Z32645-1|CAA83567.1|  258|Anopheles gambiae chymotrypsinogen-lik...    24   4.2  
Z18888-1|CAA79326.1|  258|Anopheles gambiae chymotrypsin 2 protein.    24   4.2  
AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin s...    24   4.2  

>AY524130-1|AAS17758.1|  211|Anopheles gambiae superoxide dismutase
           2 protein.
          Length = 211

 Score = 68.1 bits (159), Expect = 2e-13
 Identities = 43/130 (33%), Positives = 62/130 (47%), Gaps = 6/130 (4%)

Query: 18  QQTAEGPLVADGSIDGLSPGRHGLHVYESGDLSQGCNSIXXXXXXXXXXXXXXXXXXXXX 77
           Q +   P+  D ++ GL+PG+HG H++E GDL+ GC S                      
Sbjct: 41  QPSCTEPVFIDINVVGLTPGKHGFHIHEKGDLTDGCAS--TGGHYNPDKVSHGAPNDQVR 98

Query: 78  XXXXLGNITADANGRAAFRIVDDVLKVW---DVIGRSMGVTERGDDCGR-GDGTSRVDGN 133
               LGNI AD NG A     D V+ ++    VIGR++ +    DD G+     S   GN
Sbjct: 99  HVGDLGNIAADENGIAKTSYSDTVVSLYGARSVIGRAIVIHAEVDDLGKTNHPDSLKTGN 158

Query: 134 SGPILACGII 143
           +G  +ACG+I
Sbjct: 159 AGGRVACGVI 168


>AY745233-1|AAU93512.1|  100|Anopheles gambiae SOD3B protein.
          Length = 100

 Score = 46.4 bits (105), Expect = 7e-07
 Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 4/66 (6%)

Query: 82  LGNITADANGRAAFRIVDDVLK-VWD--VIGRSMGVTERGDDCGRG-DGTSRVDGNSGPI 137
           LGNI A + G A  +I +  L  V D  +IGR++ ++E  DD GRG    S+  GNSG  
Sbjct: 21  LGNIVAYSTGLAKIQIANKKLTLVGDRSIIGRTLSISEYEDDLGRGKHDYSKTTGNSGNC 80

Query: 138 LACGII 143
           +AC II
Sbjct: 81  IACAII 86


>AY745232-1|AAU93511.1|   75|Anopheles gambiae SOD3A protein.
          Length = 75

 Score = 40.7 bits (91), Expect = 3e-05
 Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 4/66 (6%)

Query: 82  LGNITADANGRAAFRIVDDVLKV---WDVIGRSMGVTERGDDCG-RGDGTSRVDGNSGPI 137
           +GNI AD NG A   +    + +    +V+GRS+ V    DD G  G   S+  G++G  
Sbjct: 5   MGNIVADENGEAKVDLTATQIALSGALNVVGRSLVVHADPDDLGVGGHELSKTTGDAGAR 64

Query: 138 LACGII 143
           LACG+I
Sbjct: 65  LACGVI 70


>AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 7 protein.
          Length = 509

 Score = 24.2 bits (50), Expect = 3.2
 Identities = 11/19 (57%), Positives = 13/19 (68%)

Query: 131 DGNSGPILACGIIARSAGI 149
           DG+ GPI A   I RSAG+
Sbjct: 400 DGSVGPIGATDTIGRSAGL 418


>Z32645-1|CAA83567.1|  258|Anopheles gambiae chymotrypsinogen-like
           protease ANCHYM2 protein.
          Length = 258

 Score = 23.8 bits (49), Expect = 4.2
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)

Query: 109 GRSMGVTERGDDCGRG--DGTSRV 130
           G+ +GV   G  CGRG  DG +RV
Sbjct: 220 GKLVGVVNFGVPCGRGFPDGFARV 243


>Z18888-1|CAA79326.1|  258|Anopheles gambiae chymotrypsin 2 protein.
          Length = 258

 Score = 23.8 bits (49), Expect = 4.2
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)

Query: 109 GRSMGVTERGDDCGRG--DGTSRV 130
           G+ +GV   G  CGRG  DG +RV
Sbjct: 220 GKLVGVVNFGVPCGRGFPDGFARV 243


>AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin
           subunit AgBnu protein.
          Length = 803

 Score = 23.8 bits (49), Expect = 4.2
 Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 7/82 (8%)

Query: 92  RAAFRIVDDVLKVWDVIGR----SMGVTERGDDCGRGDGTSRVD--GNSGPILACGIIAR 145
           +A +R + D++  +  +GR    S  + +  D+ G  +   RV+   NS   +       
Sbjct: 341 QAYYRRLSDLMPEFTSVGRLQDDSSNIIQLVDE-GYREFVKRVEFIDNSPDYMQLRYTTD 399

Query: 146 SAGIFQNPKRICACDGVVVWDE 167
            AG+++ P+ I  CD + +  E
Sbjct: 400 CAGLYREPQPINRCDNIEIGKE 421


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.318    0.138    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,809
Number of Sequences: 2123
Number of extensions: 6639
Number of successful extensions: 18
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 7
length of query: 224
length of database: 516,269
effective HSP length: 62
effective length of query: 162
effective length of database: 384,643
effective search space: 62312166
effective search space used: 62312166
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)