Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001698-TA|BGIBMGA001698-PA|IPR001424|Superoxide
dismutase, copper/zinc binding
(224 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc sup... 73 2e-13
L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide dism... 73 2e-13
AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxi... 73 2e-13
AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxi... 73 2e-13
Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical pr... 73 2e-13
AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide di... 73 2e-13
AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein. 73 2e-13
U42833-3|AAA83577.1| 178|Caenorhabditis elegans Sod (superoxide... 72 4e-13
Z81110-3|CAB03260.1| 949|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical pr... 29 2.7
>X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc
superoxide dismutase protein.
Length = 158
Score = 72.9 bits (171), Expect = 2e-13
Identities = 48/145 (33%), Positives = 70/145 (48%), Gaps = 10/145 (6%)
Query: 11 ILGVVRLQQTAEGP-LVADGSIDGLSPGRHGLHVYESGDLSQGCNSIXXXXXXXXXXXXX 69
+ G + + Q +E V +G I GL+PG HG HV++ GD + GC I
Sbjct: 14 VTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGC--ISAGPHFNPFGKTH 71
Query: 70 XXXXXXXXXXXXLGNITADANGRAAFRIVDDVLKVW---DVIGRSMGVTERGDDCGRGDG 126
LGN+ A A+G A ++ D ++ ++ V+GRSM V DD G G G
Sbjct: 72 GGPKSEIRHVGDLGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAGQDDLGEGVG 131
Query: 127 ----TSRVDGNSGPILACGIIARSA 147
S+ GN+G ACG+IA +A
Sbjct: 132 DKAEESKKTGNAGARAACGVIALAA 156
>L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide
dismutase protein.
Length = 158
Score = 72.9 bits (171), Expect = 2e-13
Identities = 48/145 (33%), Positives = 70/145 (48%), Gaps = 10/145 (6%)
Query: 11 ILGVVRLQQTAEGP-LVADGSIDGLSPGRHGLHVYESGDLSQGCNSIXXXXXXXXXXXXX 69
+ G + + Q +E V +G I GL+PG HG HV++ GD + GC I
Sbjct: 14 VTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGC--ISAGPHFNPFGKTH 71
Query: 70 XXXXXXXXXXXXLGNITADANGRAAFRIVDDVLKVW---DVIGRSMGVTERGDDCGRGDG 126
LGN+ A A+G A ++ D ++ ++ V+GRSM V DD G G G
Sbjct: 72 GGPKSEIRHVGDLGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAGQDDLGEGVG 131
Query: 127 ----TSRVDGNSGPILACGIIARSA 147
S+ GN+G ACG+IA +A
Sbjct: 132 DKAEESKKTGNAGARAACGVIALAA 156
>AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform b protein.
Length = 158
Score = 72.9 bits (171), Expect = 2e-13
Identities = 48/145 (33%), Positives = 70/145 (48%), Gaps = 10/145 (6%)
Query: 11 ILGVVRLQQTAEGP-LVADGSIDGLSPGRHGLHVYESGDLSQGCNSIXXXXXXXXXXXXX 69
+ G + + Q +E V +G I GL+PG HG HV++ GD + GC I
Sbjct: 14 VTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGC--ISAGPHFNPFGKTH 71
Query: 70 XXXXXXXXXXXXLGNITADANGRAAFRIVDDVLKVW---DVIGRSMGVTERGDDCGRGDG 126
LGN+ A A+G A ++ D ++ ++ V+GRSM V DD G G G
Sbjct: 72 GGPKSEIRHVGDLGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAGQDDLGEGVG 131
Query: 127 ----TSRVDGNSGPILACGIIARSA 147
S+ GN+G ACG+IA +A
Sbjct: 132 DKAEESKKTGNAGARAACGVIALAA 156
>AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform a protein.
Length = 180
Score = 72.9 bits (171), Expect = 2e-13
Identities = 48/145 (33%), Positives = 70/145 (48%), Gaps = 10/145 (6%)
Query: 11 ILGVVRLQQTAEGP-LVADGSIDGLSPGRHGLHVYESGDLSQGCNSIXXXXXXXXXXXXX 69
+ G + + Q +E V +G I GL+PG HG HV++ GD + GC I
Sbjct: 36 VTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGC--ISAGPHFNPFGKTH 93
Query: 70 XXXXXXXXXXXXLGNITADANGRAAFRIVDDVLKVW---DVIGRSMGVTERGDDCGRGDG 126
LGN+ A A+G A ++ D ++ ++ V+GRSM V DD G G G
Sbjct: 94 GGPKSEIRHVGDLGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAGQDDLGEGVG 153
Query: 127 ----TSRVDGNSGPILACGIIARSA 147
S+ GN+G ACG+IA +A
Sbjct: 154 DKAEESKKTGNAGARAACGVIALAA 178
>Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical
protein F55H2.1 protein.
Length = 176
Score = 72.5 bits (170), Expect = 2e-13
Identities = 42/138 (30%), Positives = 66/138 (47%), Gaps = 7/138 (5%)
Query: 10 KILGVVRLQQTAEGPLVADGSIDGLSPGRHGLHVYESGDLSQGCNSIXXXXXXXXXXXXX 69
+++G + Q+ L +GS+ GL+ G+HG H++E GD GC +
Sbjct: 39 ELIGTIDFDQSGSF-LKLNGSVSGLAAGKHGFHIHEKGDTGNGC--LSAGGHYNPHKLSH 95
Query: 70 XXXXXXXXXXXXLGNITADANGRAAFRIVDDVLKV---WDVIGRSMGVTERGDDCGRG-D 125
LGNI + A+G + D + + + +IGRS+ + E+ DD GRG
Sbjct: 96 GAPDDSNRHIGDLGNIESPASGDTLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRGTS 155
Query: 126 GTSRVDGNSGPILACGII 143
S+ GN+G LACG I
Sbjct: 156 DQSKTTGNAGSRLACGTI 173
>AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide
dismutase protein.
Length = 221
Score = 72.5 bits (170), Expect = 2e-13
Identities = 42/138 (30%), Positives = 66/138 (47%), Gaps = 7/138 (5%)
Query: 10 KILGVVRLQQTAEGPLVADGSIDGLSPGRHGLHVYESGDLSQGCNSIXXXXXXXXXXXXX 69
+++G + Q+ L +GS+ GL+ G+HG H++E GD GC +
Sbjct: 39 ELIGTIDFDQSGSF-LKLNGSVSGLAAGKHGFHIHEKGDTGNGC--LSAGGHYNPHKLSH 95
Query: 70 XXXXXXXXXXXXLGNITADANGRAAFRIVDDVLKV---WDVIGRSMGVTERGDDCGRG-D 125
LGNI + A+G + D + + + +IGRS+ + E+ DD GRG
Sbjct: 96 GAPDDSNRHIGDLGNIESPASGDTLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRGTS 155
Query: 126 GTSRVDGNSGPILACGII 143
S+ GN+G LACG I
Sbjct: 156 DQSKTTGNAGSRLACGTI 173
>AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein.
Length = 176
Score = 72.5 bits (170), Expect = 2e-13
Identities = 42/138 (30%), Positives = 66/138 (47%), Gaps = 7/138 (5%)
Query: 10 KILGVVRLQQTAEGPLVADGSIDGLSPGRHGLHVYESGDLSQGCNSIXXXXXXXXXXXXX 69
+++G + Q+ L +GS+ GL+ G+HG H++E GD GC +
Sbjct: 39 ELIGTIDFDQSGSF-LKLNGSVSGLAAGKHGFHIHEKGDTGNGC--LSAGGHYNPHKLSH 95
Query: 70 XXXXXXXXXXXXLGNITADANGRAAFRIVDDVLKV---WDVIGRSMGVTERGDDCGRG-D 125
LGNI + A+G + D + + + +IGRS+ + E+ DD GRG
Sbjct: 96 GAPDDSNRHIGDLGNIESPASGDTLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRGTS 155
Query: 126 GTSRVDGNSGPILACGII 143
S+ GN+G LACG I
Sbjct: 156 DQSKTTGNAGSRLACGTI 173
>U42833-3|AAA83577.1| 178|Caenorhabditis elegans Sod (superoxide
dismutase) protein5 protein.
Length = 178
Score = 71.7 bits (168), Expect = 4e-13
Identities = 52/145 (35%), Positives = 68/145 (46%), Gaps = 10/145 (6%)
Query: 11 ILGVVRLQQTAEGPLVA-DGSIDGLSPGRHGLHVYESGDLSQGCNSIXXXXXXXXXXXXX 69
+ G V L Q AEG +G I GLSPG HG H+++ GD + GC S
Sbjct: 34 VFGTVWLTQKAEGEETEFEGEIKGLSPGLHGFHIHQYGDSTDGCTS--AGPHFNPCKMNH 91
Query: 70 XXXXXXXXXXXXLGNITADANGRAAFRIVDDVLKVW---DVIGRSMGVTERGDDCGRG-- 124
LGN+ A A+G A + D V+ ++ VIGRSM V DD G+G
Sbjct: 92 GGRDSVVRHVGDLGNVEAGADGVAKIKFSDKVVSLFGANTVIGRSMVVHVDRDDLGQGID 151
Query: 125 --DGTSRVDGNSGPILACGIIARSA 147
S GN+G ACG+IA +A
Sbjct: 152 DKAEESLKTGNAGARAACGVIALAA 176
>Z81110-3|CAB03260.1| 949|Caenorhabditis elegans Hypothetical
protein T01D3.3b protein.
Length = 949
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 12 LGVVRLQQTAEGPLVADGSIDGLSPGRHGLHVYESGDLSQGCNSI 56
+G Q L G + L GRH + +++ GD S+GC+ +
Sbjct: 834 IGRFTFSQLTSTALRIHGEVYTLPVGRHAVVLHQFGDSSEGCSRV 878
>Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical
protein T01D3.3a protein.
Length = 802
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 12 LGVVRLQQTAEGPLVADGSIDGLSPGRHGLHVYESGDLSQGCNSI 56
+G Q L G + L GRH + +++ GD S+GC+ +
Sbjct: 687 IGRFTFSQLTSTALRIHGEVYTLPVGRHAVVLHQFGDSSEGCSRV 731
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.318 0.138 0.430
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,346,711
Number of Sequences: 27539
Number of extensions: 153280
Number of successful extensions: 224
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 193
Number of HSP's gapped (non-prelim): 11
length of query: 224
length of database: 12,573,161
effective HSP length: 79
effective length of query: 145
effective length of database: 10,397,580
effective search space: 1507649100
effective search space used: 1507649100
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)
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