GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001698-TA|BGIBMGA001698-PA|IPR001424|Superoxide
dismutase, copper/zinc binding
         (224 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g12520.1 68414.m01449 superoxide dismutase copper chaperone, ...    79   3e-15
At2g28190.1 68415.m03423 superoxide dismutase [Cu-Zn], chloropla...    76   2e-14
At1g08830.1 68414.m00983 superoxide dismutase [Cu-Zn] (SODCC) / ...    68   5e-12
At5g18100.1 68418.m02125 superoxide dismutase [Cu-Zn] / copper/z...    67   1e-11

>At1g12520.1 68414.m01449 superoxide dismutase copper chaperone,
           putative similar to copper chaperone for superoxide
           dismutase [Homo sapiens] gi|2431868|gb|AAC51764
          Length = 254

 Score = 78.6 bits (185), Expect = 3e-15
 Identities = 53/165 (32%), Positives = 75/165 (45%), Gaps = 19/165 (11%)

Query: 11  ILGVVRLQQTAEGPLVADGSIDGLSPGRHGLHVYESGDLSQGCNSIXXXXXXXXXXXXXX 70
           I GVVR  Q +      + +  GLSPG H   + E GDL+ G  S               
Sbjct: 107 IFGVVRFAQVSMELARIEANFTGLSPGTHSWCINEYGDLTNGAAS-------TGSLYNPF 159

Query: 71  XXXXXXXXXXXLGNITADANGRAAFRIVDDVLKVWDVIGRSMGVTERGDDCGRGDGTSRV 130
                      LG + AD NG A +    + LKV D+IGR++ V +  D+          
Sbjct: 160 QDQTGTEPLGDLGTLEADKNGEAFYSGKKEKLKVADLIGRAVVVYKTDDN---------- 209

Query: 131 DGNSGPILACGIIARSAGIFQNPKRICACDGVVVWDERDKPLAGS 175
              SGP L   +IARSAG+ +N K++C+CDG V+W+  +     S
Sbjct: 210 --KSGPGLTAAVIARSAGVGENYKKLCSCDGTVIWEATNSDFVAS 252


>At2g28190.1 68415.m03423 superoxide dismutase [Cu-Zn], chloroplast
           (SODCP) / copper/zinc superoxide dismutase (CSD2)
           identical to GP:3273753:AF061519
          Length = 216

 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 50/135 (37%), Positives = 65/135 (48%), Gaps = 6/135 (4%)

Query: 13  GVVRLQQTAEGPLVADGSIDGLSPGRHGLHVYESGDLSQGCNSIXXXXXXXXXXXXXXXX 72
           GVV L Q   GP   +  I GL+PG HG H++E GD + GC  I                
Sbjct: 79  GVVTLTQDDSGPTTVNVRITGLTPGPHGFHLHEFGDTTNGC--ISTGPHFNPNNMTHGAP 136

Query: 73  XXXXXXXXXLGNITADANGRAAFRIVDDVLKVW---DVIGRSMGVTERGDDCGR-GDGTS 128
                    LGNI A+A+G A   IVD+ + +     V+GR+  V E  DD G+ G   S
Sbjct: 137 EDECRHAGDLGNINANADGVAETTIVDNQIPLTGPNSVVGRAFVVHELKDDLGKGGHELS 196

Query: 129 RVDGNSGPILACGII 143
              GN+G  LACG+I
Sbjct: 197 LTTGNAGGRLACGVI 211


>At1g08830.1 68414.m00983 superoxide dismutase [Cu-Zn] (SODCC) /
           copper/zinc superoxide dismutase (CSD1) identical to
           SWISS-PROT: P24704
          Length = 152

 Score = 68.1 bits (159), Expect = 5e-12
 Identities = 43/137 (31%), Positives = 60/137 (43%), Gaps = 6/137 (4%)

Query: 11  ILGVVRLQQTAEGPLVADGSIDGLSPGRHGLHVYESGDLSQGCNSIXXXXXXXXXXXXXX 70
           + G +   Q  +G     G++ GL PG HG HV+  GD + GC S               
Sbjct: 14  VTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMS--TGPHFNPDGKTHG 71

Query: 71  XXXXXXXXXXXLGNITADANGRAAFRIVDDVLKVW---DVIGRSMGVTERGDDCGR-GDG 126
                      LGNIT   +G A F I D  + +     ++GR++ V    DD G+ G  
Sbjct: 72  APEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHADPDDLGKGGHE 131

Query: 127 TSRVDGNSGPILACGII 143
            S   GN+G  +ACGII
Sbjct: 132 LSLATGNAGGRVACGII 148


>At5g18100.1 68418.m02125 superoxide dismutase [Cu-Zn] / copper/zinc
           superoxide dismutase (CSD3) identical to copper/zinc
           superoxide dismutase GI:3273755
          Length = 164

 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 44/139 (31%), Positives = 62/139 (44%), Gaps = 6/139 (4%)

Query: 9   NKILGVVRLQQTAEGPLVADGSIDGLSPGRHGLHVYESGDLSQGCNSIXXXXXXXXXXXX 68
           N + G ++  Q   G     G I GLSPG HG H++  GD + GC  I            
Sbjct: 18  NNVRGCLQFVQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGC--ISTGPHFNPLNRV 75

Query: 69  XXXXXXXXXXXXXLGNITADANGRAAFRIVDDVLKV---WDVIGRSMGVTERGDDCGR-G 124
                        LGNI A +NG A   I D  + +   + ++GR++ V    DD G+ G
Sbjct: 76  HGPPNEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSILGRAVVVHADPDDLGKGG 135

Query: 125 DGTSRVDGNSGPILACGII 143
              S+  GN+G  + CGII
Sbjct: 136 HKLSKSTGNAGSRVGCGII 154


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.138    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,410,578
Number of Sequences: 28952
Number of extensions: 161511
Number of successful extensions: 243
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 231
Number of HSP's gapped (non-prelim): 5
length of query: 224
length of database: 12,070,560
effective HSP length: 78
effective length of query: 146
effective length of database: 9,812,304
effective search space: 1432596384
effective search space used: 1432596384
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)