Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001697-TA|BGIBMGA001697-PA|undefined
(118 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3G6.03c |||Maf-like protein|Schizosaccharomyces pombe|chr 1|... 26 1.8
SPAC1782.03 |||microfibrillar-associated protein family protein|... 25 2.4
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 24 5.5
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 24 5.5
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce... 24 5.5
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi... 24 7.2
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c... 24 7.2
SPBC11C11.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 24 7.2
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 24 7.2
SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyc... 24 7.2
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy... 23 9.6
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 23 9.6
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 23 9.6
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 23 9.6
SPAC664.08c |||traub transciption factor family protein |Schizos... 23 9.6
>SPAC3G6.03c |||Maf-like protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 236
Score = 25.8 bits (54), Expect = 1.8
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 49 EVLVNFDSSVDDQFLEKTIKTLKTHDGIKEVGFK-DGAFVVETVL 92
E V FD S+ D+FLE ++ + D + GA ++E+++
Sbjct: 161 ETQVKFDPSITDEFLEAYVRCGEGSDKAGGYAIQGHGALLIESII 205
>SPAC1782.03 |||microfibrillar-associated protein family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 355
Score = 25.4 bits (53), Expect = 2.4
Identities = 15/63 (23%), Positives = 26/63 (41%)
Query: 23 HDEEQTPLRRVELLTPVIAEEDYRELEVLVNFDSSVDDQFLEKTIKTLKTHDGIKEVGFK 82
HD+E + ++TPV +E E + NF + Q ++ + +T E G
Sbjct: 41 HDQENSISSSRHVITPVFEKEGISETKTSSNFQNINPVQTIDNSASEYETDASSAEGGSN 100
Query: 83 DGA 85
A
Sbjct: 101 SAA 103
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 24.2 bits (50), Expect = 5.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 74 DGIKEVGFKDGAFVVETVLPSANVLDVVGSVT 105
D I E+GF+D + +LPS N ++ S T
Sbjct: 246 DRILEIGFEDEMRQIMKILPSENRQTLLFSAT 277
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 24.2 bits (50), Expect = 5.5
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 64 EKTIKTLKTHDGIKEVGFKDGAFVVETVLPSANVLDVVGSVTGR 107
EKT K +T G K + F + P V +GS TGR
Sbjct: 41 EKTAKR-RTVKGCKNGTSEPNVFKARPIPPPRQVSSTIGSSTGR 83
>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 24.2 bits (50), Expect = 5.5
Identities = 13/53 (24%), Positives = 26/53 (49%)
Query: 8 VSLDHLQHSEVYKLIHDEEQTPLRRVELLTPVIAEEDYRELEVLVNFDSSVDD 60
+SL ++ EV KL E + + +L+T ++ +L + + D +V D
Sbjct: 306 ISLKRIKELEVEKLSSVTEDSTAQTCKLITLLLRSSKSEDLRLSIPVDFTVKD 358
>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 23.8 bits (49), Expect = 7.2
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 7 PVSLDHLQHSEVYKLIHDEEQTPLRRVELLTPVIAEEDYRELEVLVNFDSSVDDQFLEKT 66
P++ + + + K+ E+Q L E L P+++ ED L D+S+ F
Sbjct: 257 PITFELNDDTLLEKISFKEDQKSLAPSEELDPILSSEDPNHPSKLDPLDASLLLAFCH-I 315
Query: 67 IKTLKTHDGI 76
IK DG+
Sbjct: 316 IKNNNPDDGL 325
>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 606
Score = 23.8 bits (49), Expect = 7.2
Identities = 10/20 (50%), Positives = 15/20 (75%), Gaps = 2/20 (10%)
Query: 12 HLQH--SEVYKLIHDEEQTP 29
H+ H S+ Y+LI D+E+TP
Sbjct: 268 HIYHTISKKYELIDDQEETP 287
>SPBC11C11.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 178
Score = 23.8 bits (49), Expect = 7.2
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 12 HLQHSEVYKLIHDEEQTPLRRVELLTP----VIAEEDYRELEVLVNFDSSVDDQFL 63
H ++E+ + H EQT + P V++EE Y++ E +V D D FL
Sbjct: 9 HPSYAEIVRE-HAPEQTAAEKAAPQPPEVEEVLSEEPYQKNEKVVVLDEEDADAFL 63
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 23.8 bits (49), Expect = 7.2
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 38 PVIAEEDYRELEVLVNFDSSVDDQFLEKTIKTLKT 72
P + +Y L+ L N DS QF +K I+ LK+
Sbjct: 943 PDVMASEY--LQALSNLDSRSFKQFFQKFIQALKS 975
>SPAC24B11.06c |sty1|spc1, phh1|MAP kinase
Sty1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 349
Score = 23.8 bits (49), Expect = 7.2
Identities = 9/15 (60%), Positives = 13/15 (86%)
Query: 37 TPVIAEEDYRELEVL 51
TPV+A+ YREL++L
Sbjct: 57 TPVLAKRTYRELKLL 71
>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 543
Score = 23.4 bits (48), Expect = 9.6
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 55 DSSVDDQFLEKTIKTLKTHDGIKEVGFKDGAFVVETVLPSANVLDVVGSVTG 106
DS + + I L +D ++ G++D + + + VLD VG TG
Sbjct: 217 DSYYFESYAGNDIHFLMLNDSVRTEGYRDFVYHNKHIFAGKTVLD-VGCGTG 267
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 23.4 bits (48), Expect = 9.6
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 20 KLIHDEEQTPLRRVELLTPVIAEEDYRELEVLVNFDSSVDDQFLEKT 66
KL+ EEQ RRV +LT + Y + + +F +S DD L T
Sbjct: 578 KLLEREEQQIYRRVRVLT-TDGFKKYHGFD-MTDFSASDDDPVLITT 622
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 23.4 bits (48), Expect = 9.6
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 74 DGIKEVGFKDGAFVVETVLPSANVLDVVGSV 104
D + ++GF+D + + LPS+N + GS+
Sbjct: 409 DRMLDMGFEDDVNKILSSLPSSNASEKDGSI 439
>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 529
Score = 23.4 bits (48), Expect = 9.6
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 88 VETVLPSANVLDVVGSVTGRPAVIQGFGGND 118
++T PSANV +V+ S+ + + GN+
Sbjct: 367 LQTAAPSANVNEVIASLESKVVTRRTGSGNN 397
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 23.4 bits (48), Expect = 9.6
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 40 IAEEDYRELEVLVNFDSSVDDQFLEKTIKTLKTHDGIKE 78
I E+D L+ ++N + + DQ ++ +K +KE
Sbjct: 134 IPEKDMDRLKKIINGEKKLSDQIRTSALEDMKKGLALKE 172
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.137 0.383
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 575,599
Number of Sequences: 5004
Number of extensions: 23119
Number of successful extensions: 51
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 42
Number of HSP's gapped (non-prelim): 15
length of query: 118
length of database: 2,362,478
effective HSP length: 65
effective length of query: 53
effective length of database: 2,037,218
effective search space: 107972554
effective search space used: 107972554
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 48 (23.4 bits)
- SilkBase 1999-2023 -