Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001697-TA|BGIBMGA001697-PA|undefined
(118 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1584 + 27907345-27907357,27907693-27908039,27908202-279083... 30 0.42
08_01_0652 + 5627226-5628395,5628885-5629040,5629115-5629304,562... 28 1.7
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265... 28 1.7
08_01_0653 + 5633673-5634821,5635730-5635885,5635942-5636152,563... 27 3.0
01_05_0799 + 25334460-25334994,25335060-25335236,25335325-253354... 27 3.9
06_01_0616 + 4467439-4467733,4469232-4469294,4469840-4471176,447... 27 5.2
09_06_0352 + 22472369-22472731,22472829-22472941,22473420-224742... 26 6.8
02_01_0312 - 2082614-2082677,2082815-2082945,2083041-2083129,208... 26 6.8
08_01_0889 + 8753877-8754236,8754995-8755054,8755174-8755250,875... 26 9.0
>07_03_1584 +
27907345-27907357,27907693-27908039,27908202-27908319,
27908653-27908705,27908808-27908978,27909447-27909643,
27909729-27909807,27909954-27909992,27910202-27910321,
27910417-27910518,27910654-27910737,27910832-27911074,
27911156-27911281,27911365-27911439,27911534-27911605,
27911807-27911926,27912075-27912172,27912643-27912802,
27912867-27912980,27913029-27913121,27913122-27913319,
27913404-27913497,27914032-27914192
Length = 958
Score = 30.3 bits (65), Expect = 0.42
Identities = 19/64 (29%), Positives = 29/64 (45%)
Query: 22 IHDEEQTPLRRVELLTPVIAEEDYRELEVLVNFDSSVDDQFLEKTIKTLKTHDGIKEVGF 81
+ D+ T + E + + Y + V DS +DD+ ++ TIK L T G G
Sbjct: 879 LKDKYTTRPAKEETINDPTNPKHYWRFRLHVTLDSLLDDKDIQATIKELVTSSGRSFPGK 938
Query: 82 KDGA 85
DGA
Sbjct: 939 VDGA 942
>08_01_0652 +
5627226-5628395,5628885-5629040,5629115-5629304,
5629590-5629729
Length = 551
Score = 28.3 bits (60), Expect = 1.7
Identities = 16/51 (31%), Positives = 24/51 (47%)
Query: 33 VELLTPVIAEEDYRELEVLVNFDSSVDDQFLEKTIKTLKTHDGIKEVGFKD 83
+ L+TP I ++ LE LV+ +DD FL + D I E +D
Sbjct: 238 LNLITPYIQVPSFKNLESLVSCSVILDDFFLGDAYEHSSDEDDIDETTDED 288
>02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,
2657523-2657649,2657731-2657812,2658172-2658196
Length = 2621
Score = 28.3 bits (60), Expect = 1.7
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 12 HLQHSEVYKLIHDEEQTPLRRVELLTPVIAEEDYRELEVLVNFDSSVDDQFLEK 65
H QH + K + DE + +E L + EE+ RELEVL N + ++ EK
Sbjct: 2296 HDQHGRI-KDLSDELSKKDQEIEGLMQALDEEE-RELEVLENKSNDLEKMLQEK 2347
>08_01_0653 +
5633673-5634821,5635730-5635885,5635942-5636152,
5636488-5636624
Length = 550
Score = 27.5 bits (58), Expect = 3.0
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 33 VELLTPVIAEEDYRELEVLVNFDSSVDDQFLEKTIKTLKTHDGIKE 78
+ ++TP I ++ LE LV +DD FL + + D I E
Sbjct: 232 LNIVTPYIRVPSFKNLESLVTCSIILDDLFLGDDYQHISDEDDIDE 277
>01_05_0799 +
25334460-25334994,25335060-25335236,25335325-25335447,
25335559-25335624,25335717-25336685,25336791-25336912,
25337156-25337549,25337888-25338009,25338253-25338646,
25338983-25339104,25339348-25339830,25340291-25340960,
25341713-25342224,25342484-25342540
Length = 1581
Score = 27.1 bits (57), Expect = 3.9
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 8 VSLDHLQHSEVYKLIHDEEQTPLRRVELLTPV--IAEEDYRELEVLVNFDSSVDDQFLEK 65
VS++H QHS + + +E P++ V P E D R E L+N + L +
Sbjct: 226 VSIEHDQHSPILDGVTQDESIPVQAVHQDVPSSDYIEFDSRLFEPLLNNYDDEGNVELTQ 285
Query: 66 TIKTLKTHDGIKEVGFKDGAF 86
T + + D +E+ KD ++
Sbjct: 286 TCDVVDSDD--EELQNKDDSY 304
>06_01_0616 +
4467439-4467733,4469232-4469294,4469840-4471176,
4472719-4473086,4473526-4473559,4473978-4474421
Length = 846
Score = 26.6 bits (56), Expect = 5.2
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 3 YEKPPVSLDHLQHSEVYKLIHDEEQTPLRRVELLTPV-IAEEDYRELEVLVNFDSSVDDQ 61
Y+ PV+ + L + ++ L+H++E+ +L+ V + N S +
Sbjct: 543 YQYVPVTDNMLSYDKMVNLVHEKEKLESNLSKLVVIVWVFTVLIITTSYTANLTSMLTVG 602
Query: 62 FLEKTIKTLKTHDGIKEVGFKDGAFV 87
L+ TI LK D VG++ G+FV
Sbjct: 603 QLQPTINELKKGD---YVGYQQGSFV 625
>09_06_0352 +
22472369-22472731,22472829-22472941,22473420-22474226,
22474314-22474620,22474862-22475027,22475491-22475534,
22476019-22476161,22477900-22477937,22478032-22478129,
22478130-22478220,22478514-22478693,22479311-22479495,
22479583-22479678,22480151-22480297,22480763-22480864,
22480932-22481564
Length = 1170
Score = 26.2 bits (55), Expect = 6.8
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 47 ELEVLVNFDSSVDDQFL-EKTIKTLKTHDGIKEVGFKDGAF-----VVETVLPSANVLD 99
+L++ VNF ++ DDQ+ +K I ++ + ++G F VV +P NV+D
Sbjct: 748 DLDLSVNFTANTDDQYARKKKISAIRKFTKVLYSHQRNGIFCGVLPVVTARVPIVNVID 806
>02_01_0312 -
2082614-2082677,2082815-2082945,2083041-2083129,
2083223-2083292,2083429-2083509,2083768-2083821,
2084864-2085067,2086272-2086366,2086976-2086997,
2087492-2087585,2087677-2087764,2087874-2087979,
2088103-2088189,2088261-2088309,2088418-2088521,
2088605-2088697,2088900-2088974,2089316-2089384,
2090182-2090250,2090339-2090374,2090471-2090565,
2090836-2090911,2091067-2091153,2091287-2091355,
2091654-2091731,2091836-2091925,2092436-2092642,
2092736-2092879
Length = 841
Score = 26.2 bits (55), Expect = 6.8
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 63 LEKTIKTLKTHDGIKEVGFKDGAFVVETVLPSANVLDVVGSVTGRPAVIQGFGG 116
LEK+ + HDG K+ G ++ + LPS N L G G PA + G
Sbjct: 154 LEKSEPMDEDHDGAKDNSDMVGYSLIRSTLPSMNSL---GRWFGEPAFLTNARG 204
>08_01_0889 +
8753877-8754236,8754995-8755054,8755174-8755250,
8755481-8755622,8755736-8755772,8755852-8755921,
8756021-8756212,8756321-8756413,8756545-8756773,
8756861-8756944,8757041-8757192,8757279-8757375,
8757576-8757725,8757813-8757890,8757982-8758104,
8758169-8758315,8758418-8758472,8758807-8758874
Length = 737
Score = 25.8 bits (54), Expect = 9.0
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 40 IAEEDYRELEVLVNFDSSVDDQFLEKTIKTLKTHDGIKE 78
+A + +R L +V S+D E +K+L+T D + +
Sbjct: 682 MARDVHRVLHTIVQEQGSLDSSKAESFVKSLQTEDDVSK 720
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.137 0.383
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,697,050
Number of Sequences: 37544
Number of extensions: 141253
Number of successful extensions: 194
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 190
Number of HSP's gapped (non-prelim): 9
length of query: 118
length of database: 14,793,348
effective HSP length: 73
effective length of query: 45
effective length of database: 12,052,636
effective search space: 542368620
effective search space used: 542368620
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 54 (25.8 bits)
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