GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001697-TA|BGIBMGA001697-PA|undefined
         (118 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical pr...    29   1.1  
AF099003-1|AAC68742.1|  440|Caenorhabditis elegans Hypothetical ...    28   1.5  
U80836-7|AAB37893.3|  451|Caenorhabditis elegans Hypothetical pr...    28   2.0  
U53150-7|ABB51189.1| 1375|Caenorhabditis elegans Twik family of ...    28   2.0  
U53150-6|ABB51187.1| 1544|Caenorhabditis elegans Twik family of ...    28   2.0  
U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of ...    28   2.0  
AL132860-15|CAB60497.1|  619|Caenorhabditis elegans Hypothetical...    27   2.6  
U39742-3|AAY86225.1|  188|Caenorhabditis elegans Hypothetical pr...    26   6.0  

>L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical
           protein C06E1.10 protein.
          Length = 1148

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 35  LLTPVIAEEDYRELEVLVNFDSSVDDQFLEKTI-KTLKTHD 74
           LLTP + + D R+  V V+F+    D ++     KT + H+
Sbjct: 407 LLTPKVIKVDARQFPVSVHFEKRTPDDYIASAFRKTCRIHE 447


>AF099003-1|AAC68742.1|  440|Caenorhabditis elegans Hypothetical
           protein Y59C2A.2 protein.
          Length = 440

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/42 (30%), Positives = 23/42 (54%)

Query: 42  EEDYRELEVLVNFDSSVDDQFLEKTIKTLKTHDGIKEVGFKD 83
           E  Y  L  + N     D++ LEK + T+K +D ++E+ + D
Sbjct: 209 ETYYSALFSIFNVHVFADEEDLEKALATMKHYDPVEELEYHD 250


>U80836-7|AAB37893.3|  451|Caenorhabditis elegans Hypothetical
           protein B0432.13 protein.
          Length = 451

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 4/107 (3%)

Query: 6   PPVSLDHLQHSEVYKLIH-DEEQTPLRRVELLTPVIAEEDYRELEVLVNFDSSVDDQFLE 64
           PP     +   E  ++I  D E +  ++ E  TPV +     +  +  NFD   DD++  
Sbjct: 279 PPAKRKSMGFDESSQMIDPDGELSFFKQNENRTPVTSVPSTSKAVLPFNFDDDEDDEYF- 337

Query: 65  KTIKTLKTHDGIKE--VGFKDGAFVVETVLPSANVLDVVGSVTGRPA 109
           KT K  +    + E      + +F  +  +P + +  +    T +PA
Sbjct: 338 KTPKIAEKKKKLPEAMAPVSEDSFDFDIAVPQSIINRIPAKTTAQPA 384


>U53150-7|ABB51189.1| 1375|Caenorhabditis elegans Twik family of
            potassium channelsprotein 11, isoform c protein.
          Length = 1375

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/18 (55%), Positives = 15/18 (83%)

Query: 61   QFLEKTIKTLKTHDGIKE 78
            +F+E+ ++T  THDGIKE
Sbjct: 1029 KFVEENLQTQNTHDGIKE 1046


>U53150-6|ABB51187.1| 1544|Caenorhabditis elegans Twik family of
            potassium channelsprotein 11, isoform a protein.
          Length = 1544

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/18 (55%), Positives = 15/18 (83%)

Query: 61   QFLEKTIKTLKTHDGIKE 78
            +F+E+ ++T  THDGIKE
Sbjct: 1029 KFVEENLQTQNTHDGIKE 1046


>U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of
            potassium channelsprotein 11, isoform b protein.
          Length = 1720

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/18 (55%), Positives = 15/18 (83%)

Query: 61   QFLEKTIKTLKTHDGIKE 78
            +F+E+ ++T  THDGIKE
Sbjct: 1029 KFVEENLQTQNTHDGIKE 1046


>AL132860-15|CAB60497.1|  619|Caenorhabditis elegans Hypothetical
           protein Y56A3A.16 protein.
          Length = 619

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 54  FDSSVDDQFLEKTIKTLKTHDGIKE 78
           FD+ VDD  LE T +TL+   G+ E
Sbjct: 138 FDNDVDDNLLETTCRTLQISMGLCE 162


>U39742-3|AAY86225.1|  188|Caenorhabditis elegans Hypothetical
          protein C25F6.8 protein.
          Length = 188

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 5  KPPVSLDHLQHSEVYKLIHDEEQTPLRR 32
          KPP   DHL  +  YKL+H   +   +R
Sbjct: 21 KPPCCRDHLGSTACYKLMHQNTRLFAKR 48


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.315    0.137    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,091,875
Number of Sequences: 27539
Number of extensions: 124506
Number of successful extensions: 226
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 219
Number of HSP's gapped (non-prelim): 8
length of query: 118
length of database: 12,573,161
effective HSP length: 73
effective length of query: 45
effective length of database: 10,562,814
effective search space: 475326630
effective search space used: 475326630
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 54 (25.8 bits)